RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 SGO2Q562F6 1265 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 C6orf118Q5T5N4 469 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 MFSD5Q6N075 450 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 FOXR1Q6PIV2 292 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 RHBDF2Q6PJF5 856 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 SEPT14Q6ZU15 432 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 PRRT2Q7Z6L0 340 aaPredicted RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 YTHDF3Q7Z739 585 aaKnown RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 NLRP14Q86W24 1093 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 ZDHHC14Q8IZN3 488 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 SHCBP1Q8NEM2 672 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 EXD1Q8NHP7 514 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 FBXO25Q8TCJ0 367 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 ZNF526Q8TF50 670 aaPredicted RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 ZNF473Q8WTR7 871 aaKnown RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 GTF3C2Q8WUA4 911 aaPredicted RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 GLG1Q92896 1179 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 SNF8Q96H20 258 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 RBM41Q96IZ5 413 aaKnown RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 PI4K2AQ9BTU6 479 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 TRIM31Q9BZY9 425 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 DCLK3Q9C098 648 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 NIF3L1Q9GZT8 377 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 HAPLN2Q9GZV7 340 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 EPB41L4BQ9H329 900 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 FAM124BQ9H5Z6 455 aaPredicted RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 APOBEC3GQ9HC16 384 aaKnown RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 ACP6Q9NPH0 428 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 ADARB2Q9NS39 739 aaKnown RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 PARVAQ9NVD7 372 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 ADAM22Q9P0K1 906 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 BTBD7Q9P203 1132 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 IP6K2Q9UHH9 426 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 PCDHGC3Q9UN70 934 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 ATP8A1Q9Y2Q0 1164 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 TELO2Q9Y4R8 837 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 LRRC37A2A6NM11 1700 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 PTPRJQ12913 1337 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 UMODL1Q5DID0 1318 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 COL11A1P12107 1806 aaPredicted RBP6.66□□□□□ -1.34
CLN3-223ENST00000566472 LCTP09848 1927 aa6.66□□□□□ -1.34
CLN3-223ENST00000566472 GMNCA6NCL1 334 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 SPDYE5A6NIY4 337 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 ABLIM1O14639 778 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 CLDN3O15551 220 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 RIPK2O43353 540 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 TRAPPC3O43617 180 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 FAM189A1O60320 539 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 HBP1O60381 514 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 B4GALT4O60513 344 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 MSCO60682 206 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 CNMDO75829 334 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 KIAA0754O94854 1291 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 IL18RAPO95256 599 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 PRKCBP05771 671 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 ATF2P15336 505 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 OSBPP22059 807 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 PROZP22891 400 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 MMP8P22894 467 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 EIF4BP23588 611 aaKnown RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 ATP5DP30049 168 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 TCF7P36402 384 aaPredicted RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 ACOT2P49753 483 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 WNT7BP56706 349 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 GSCP56915 257 aaPredicted RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 COPS2P61201 443 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 GUCY1A3Q02108 690 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 KRT17Q04695 432 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 KLF1Q13351 362 aaPredicted RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 PPIL2Q13356 520 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 DRP2Q13474 957 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 MAMLD1Q13495 774 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 PPP1R7Q15435 360 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 MAPK6Q16659 721 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 KYAT1Q16773 422 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 DUOXA2Q1HG44 320 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 SGSM1Q2NKQ1 1148 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 ZNF568Q3ZCX4 644 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 TNFAIP8L3Q5GJ75 292 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 CELF3Q5SZQ8 465 aaKnown RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 TREML2Q5T2D2 321 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 PRAMEF18Q5VWM3 479 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 AADACL2Q6P093 401 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 DRICH1Q6PGQ1 229 aaPredicted RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 TMEM270Q6UE05 265 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 TRMT1LQ7Z2T5 733 aaKnown RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 ADAT2Q7Z6V5 191 aaKnown RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 NCAPG2Q86XI2 1143 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 ERO1BQ86YB8 467 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 IFNLR1Q8IU57 520 aaPredicted RBP6.65□□□□□ -1.34
CLN3-223ENST00000566472 RELL1Q8IUW5 271 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 SULF1Q8IWU6 871 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 NIPA2Q8N8Q9 360 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 CCDC89Q8N998 374 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 TMEM35BQ8NCS4 154 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 OR2W6PQ8NHA6 318 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 ATL2Q8NHH9 583 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 FEZF2Q8TBJ5 459 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 MYCBPAPQ8TBZ2 947 aa6.65□□□□□ -1.34
CLN3-223ENST00000566472 PPM1EQ8WY54 764 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms