RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ELSPBP1Q96BH3 223 aa18.42■□□□□ 0.54
CLN3-211ENST00000564091 RMDN1Q96DB5 314 aa18.42■□□□□ 0.54
CLN3-211ENST00000564091 TBC1D32Q96NH3 1257 aa18.42■□□□□ 0.54
CLN3-211ENST00000564091 DMXL1Q9Y485 3027 aa18.42■□□□□ 0.54
CLN3-211ENST00000564091 OTOGLQ3ZCN5 2332 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 NPHP3-ACAD11A0A0J9YXS1 232 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 SHISA7A6NL88 538 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 MAPTP10636 758 aaKnown RBP18.41■□□□□ 0.54
CLN3-211ENST00000564091 FCARP24071 287 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 CACNB1Q02641 598 aaPredicted RBP18.41■□□□□ 0.54
CLN3-211ENST00000564091 NOLC1Q14978 699 aaKnown RBP eCLIP18.41■□□□□ 0.54
CLN3-211ENST00000564091 ERICH6BQ5W0A0 696 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 TPGS2Q68CL5 300 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 ZNF280DQ6N043 979 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 SUMF1Q8NBK3 374 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 APPL2Q8NEU8 664 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 RUBCNQ92622 972 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 DDX12PQ92771 950 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 ZSWIM3Q96MP5 696 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 TIPINQ9BVW5 301 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 CEP72Q9P209 647 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 FBXO4Q9UKT5 387 aa18.41■□□□□ 0.54
CLN3-211ENST00000564091 CACNA1IQ9P0X4 2223 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 ZNF197O14709 1029 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 CLDN3O15551 220 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 KINO60870 393 aaKnown RBP18.4■□□□□ 0.54
CLN3-211ENST00000564091 CXCL8P10145 99 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 GJA1P17302 382 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 MARCKSP29966 332 aaPredicted RBP18.4■□□□□ 0.54
CLN3-211ENST00000564091 MATR3P43243 847 aaKnown RBP eCLIP18.4■□□□□ 0.54
CLN3-211ENST00000564091 SMTNP53814 917 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 ATP2C1P98194 919 aaPredicted RBP18.4■□□□□ 0.54
CLN3-211ENST00000564091 TWF1Q12792 350 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 FZD5Q13467 585 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 CYP4A22Q5TCH4 519 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 TSSK4Q6SA08 328 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 ZNF852Q6ZMS4 543 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 RNF19BQ6ZMZ0 732 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 SYT2Q8N9I0 419 aaPredicted RBP18.4■□□□□ 0.54
CLN3-211ENST00000564091 CLDN23Q96B33 292 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 NELL2Q99435 816 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 HAPLN2Q9GZV7 340 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 ZFP14Q9HCL3 533 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 AFF4Q9UHB7 1163 aaKnown RBP18.4■□□□□ 0.54
CLN3-211ENST00000564091 PCDHB8Q9UN66 801 aa18.4■□□□□ 0.54
CLN3-211ENST00000564091 TIMM13Q9Y5L4 95 aaPredicted RBP18.4■□□□□ 0.54
CLN3-211ENST00000564091 MTCL1Q9Y4B5 1905 aaKnown RBP18.4■□□□□ 0.54
CLN3-211ENST00000564091 CACNA1AO00555 2505 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 VWA3AA6NCI4 1184 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 MOSPD3O75425 235 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 PLA2G4BP0C869 781 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 MYL4P12829 197 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 VIPR2P41587 438 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 SLC12A3P55017 1021 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 MCL1Q07820 350 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 ZNF528Q3MIS6 628 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 HYIQ5T013 277 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 IQCEQ6IPM2 695 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 ZPBP2Q6X784 338 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 ELMOD1Q8N336 334 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 ZNF512Q96ME7 567 aaPredicted RBP18.39■□□□□ 0.53
CLN3-211ENST00000564091 ASB16Q96NS5 453 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 BRD9Q9H8M2 597 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 VWA8A3KMH1 1905 aa18.39■□□□□ 0.53
CLN3-211ENST00000564091 MICAL2O94851 1124 aa18.38■□□□□ 0.53
CLN3-211ENST00000564091 OR4Q2P0C623 313 aa18.38■□□□□ 0.53
CLN3-211ENST00000564091 CPB1P15086 417 aa18.38■□□□□ 0.53
CLN3-211ENST00000564091 TNFSF9P41273 254 aa18.38■□□□□ 0.53
CLN3-211ENST00000564091 MAGEA9P43362 315 aa18.38■□□□□ 0.53
CLN3-211ENST00000564091 GUCY2FP51841 1108 aa18.38■□□□□ 0.53
CLN3-211ENST00000564091 RILPL1Q5EBL4 403 aa18.38■□□□□ 0.53
CLN3-211ENST00000564091 ARSHQ5FYA8 562 aa18.38■□□□□ 0.53
CLN3-211ENST00000564091 ATRIPQ8WXE1 791 aa18.38■□□□□ 0.53
CLN3-211ENST00000564091 DNASE1L2Q92874 299 aa18.38■□□□□ 0.53
CLN3-211ENST00000564091 SMARCD2Q92925 531 aa18.38■□□□□ 0.53
CLN3-211ENST00000564091 KIF12Q96FN5 646 aa18.38■□□□□ 0.53
CLN3-211ENST00000564091 PGLYRP2Q96PD5 576 aa18.38■□□□□ 0.53
CLN3-211ENST00000564091 TRMT61BQ9BVS5 477 aaKnown RBP18.38■□□□□ 0.53
CLN3-211ENST00000564091 KCNG1Q9UIX4 513 aa18.38■□□□□ 0.53
CLN3-211ENST00000564091 NDRG2Q9UN36 371 aaKnown RBP18.38■□□□□ 0.53
CLN3-211ENST00000564091 TTC26A0AVF1 554 aa18.37■□□□□ 0.53
CLN3-211ENST00000564091 NCAM2O15394 837 aa18.37■□□□□ 0.53
CLN3-211ENST00000564091 VNN2O95498 520 aa18.37■□□□□ 0.53
CLN3-211ENST00000564091 CLTAP09496 248 aa18.37■□□□□ 0.53
CLN3-211ENST00000564091 GDI1P31150 447 aa18.37■□□□□ 0.53
CLN3-211ENST00000564091 YWHAHQ04917 246 aaPredicted RBP18.37■□□□□ 0.53
CLN3-211ENST00000564091 MTAPQ13126 283 aa18.37■□□□□ 0.53
CLN3-211ENST00000564091 VITQ6UXI7 678 aa18.37■□□□□ 0.53
CLN3-211ENST00000564091 BICD1Q96G01 975 aa18.37■□□□□ 0.53
CLN3-211ENST00000564091 CDK5RAP3Q96JB5 506 aa18.37■□□□□ 0.53
CLN3-211ENST00000564091 PLEKHA5Q9HAU0 1116 aa18.37■□□□□ 0.53
CLN3-211ENST00000564091 ASAH2Q9NR71 780 aa18.37■□□□□ 0.53
CLN3-211ENST00000564091 MRPS17Q9Y2R5 130 aaKnown RBP18.37■□□□□ 0.53
CLN3-211ENST00000564091 PCDHGA2Q9Y5H1 932 aa18.37■□□□□ 0.53
CLN3-211ENST00000564091 CEP250Q9BV73 2442 aa18.37■□□□□ 0.53
CLN3-211ENST00000564091 LACTBL1A8MY62 500 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 M0QZQ0 153 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 SPTLC1O15269 473 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 OAZ2O95190 189 aa18.36■□□□□ 0.53
CLN3-211ENST00000564091 LRPAP1P30533 357 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms