RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 DNAAF5Q86Y56 855 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 HVCN1Q96D96 273 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 CYFIP2Q96F07 1278 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 SLITRK1Q96PX8 696 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 KLHL11Q9NVR0 708 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 PACSIN2Q9UNF0 486 aaPredicted RBP9.82□□□□□ -0.84
VPS39-205ENST00000562258 FRMPD4Q14CM0 1322 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 MYZAPP0CAP1 466 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 ODC1P11926 461 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 KRT3P12035 628 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 CTNNB1P35222 781 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 DENND2CQ68D51 928 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 LRRC31Q6UY01 552 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 MKNK1Q9BUB5 465 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 GOLGA2P5Q9HBQ8 144 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 PLIN4Q96Q06 1357 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 SCP2P22307 547 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 EPHB1P54762 984 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 PRMT2P55345 433 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 GPC5P78333 572 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 CYP4A22Q5TCH4 519 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 JADE1Q6IE81 842 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 CENPPQ6IPU0 288 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 TTI2Q6NXR4 508 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 CLEC17AQ6ZS10 378 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 ARFGAP3Q9NP61 516 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 SMPD4Q9NXE4 827 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 NUDT5Q9UKK9 219 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 UTP11Q9Y3A2 253 aaKnown RBP9.81□□□□□ -0.84
VPS39-205ENST00000562258 SLC16A3O15427 465 aaKnown RBP9.81□□□□□ -0.84
VPS39-205ENST00000562258 FAM200BP0CF97 657 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 PTENP60484 403 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 CYP24A1Q07973 514 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 SNX17Q15036 470 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 ADGRF2Q8IZF7 708 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 TMEM161BQ8NDZ6 487 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 SPIRE2Q8WWL2 714 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 TNFRSF25Q93038 417 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 NUP85Q9BW27 656 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 CDT1Q9H211 546 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 TSPYL2Q9H2G4 693 aaPredicted RBP9.81□□□□□ -0.84
VPS39-205ENST00000562258 DDX43Q9NXZ2 648 aaKnown RBP9.81□□□□□ -0.84
VPS39-205ENST00000562258 GTF3C4Q9UKN8 822 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 MYH13Q9UKX3 1938 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 PI4K2BG5E9Z4 385 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 KIF3CO14782 793 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 ZRANB2O95218 330 aaKnown RBP eCLIP9.81□□□□□ -0.84
VPS39-205ENST00000562258 SPATA31D3P0C874 917 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 RALAP11233 206 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 MYL4P12829 197 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 PBX3P40426 434 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 GRB14Q14449 540 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 C10orf120Q5SQS8 335 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 SPATA31D4Q6ZUB0 917 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 ENOSF1Q7L5Y1 443 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 DNAAF3Q8N9W5 541 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 MS4A4AQ96JQ5 239 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 TSPYL1Q9H0U9 437 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 SUDS3Q9H7L9 328 aaPredicted RBP9.81□□□□□ -0.84
VPS39-205ENST00000562258 CNTRLQ7Z7A1 2325 aa9.81□□□□□ -0.84
VPS39-205ENST00000562258 UNCXA6NJT0 531 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 NEMP1O14524 444 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 APOEP02649 317 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 RPLP2P05387 115 aaKnown RBP9.8□□□□□ -0.84
VPS39-205ENST00000562258 NCAM1P13591 858 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 ATP2A2P16615 1042 aaKnown RBP9.8□□□□□ -0.84
VPS39-205ENST00000562258 RECQLP46063 649 aaPredicted RBP9.8□□□□□ -0.84
VPS39-205ENST00000562258 NPY5RQ15761 445 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 CCDC14Q49A88 953 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 TRIM65Q6PJ69 517 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 ZPBP2Q6X784 338 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 LRRC8DQ7L1W4 858 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 BBS5Q8N3I7 341 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 AGPAT1Q99943 283 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 FAM105AQ9NUU6 356 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 INTS13Q9NVM9 706 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 KANSL3Q9P2N6 904 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 COL22A1Q8NFW1 1626 aaPredicted RBP9.8□□□□□ -0.84
VPS39-205ENST00000562258 SLC26A4O43511 780 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 ZMYND10O75800 440 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 FGBP02675 491 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 MCF2P10911 925 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 SELPP16109 830 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 PNPLA4P41247 253 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 CRYBB1P53674 252 aaPredicted RBP9.8□□□□□ -0.84
VPS39-205ENST00000562258 CDK17Q00537 523 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 ARHGAP1Q07960 439 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 SMAD1Q15797 465 aaKnown RBP9.8□□□□□ -0.84
VPS39-205ENST00000562258 GOLGA7BQ2TAP0 167 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 DARS2Q6PI48 645 aaKnown RBP9.8□□□□□ -0.84
VPS39-205ENST00000562258 MTMR8Q96EF0 704 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 AP1M1Q9BXS5 423 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 STK33Q9BYT3 514 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 R3HDMLQ9H3Y0 253 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 MORF4L1Q9UBU8 362 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 TJP2Q9UDY2 1190 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 MSRAQ9UJ68 235 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 NOC2LQ9Y3T9 749 aaKnown RBP9.8□□□□□ -0.84
VPS39-205ENST00000562258 CALB1P05937 261 aa9.8□□□□□ -0.84
VPS39-205ENST00000562258 CUL2Q13617 745 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms