RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 DGLUCYQ7Z3D6 616 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 SPIRE2Q8WWL2 714 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 TCEAL4Q96EI5 215 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 ACAP3Q96P50 834 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 IER2Q9BTL4 223 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 TIPINQ9BVW5 301 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 HEBP1Q9NRV9 189 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 AFF4Q9UHB7 1163 aaKnown RBP17.99■□□□□ 0.47
CLN3-208ENST00000561505 DNM3Q9UQ16 869 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 LAD1O00515 517 aa17.98■□□□□ 0.47
CLN3-208ENST00000561505 MAN2B1O00754 1011 aa17.98■□□□□ 0.47
CLN3-208ENST00000561505 HIP1RO75146 1068 aa17.98■□□□□ 0.47
CLN3-208ENST00000561505 ELF1P32519 619 aa17.98■□□□□ 0.47
CLN3-208ENST00000561505 PTGDRQ13258 359 aa17.98■□□□□ 0.47
CLN3-208ENST00000561505 DMP1Q13316 513 aaPredicted RBP17.98■□□□□ 0.47
CLN3-208ENST00000561505 ZBTB6Q15916 424 aa17.98■□□□□ 0.47
CLN3-208ENST00000561505 HYIQ5T013 277 aa17.98■□□□□ 0.47
CLN3-208ENST00000561505 LEMD2Q8NC56 503 aa17.98■□□□□ 0.47
CLN3-208ENST00000561505 DRC1Q96MC2 740 aa17.98■□□□□ 0.47
CLN3-208ENST00000561505 RUSC1Q9BVN2 902 aa17.98■□□□□ 0.47
CLN3-208ENST00000561505 LRRC3Q9BY71 257 aa17.98■□□□□ 0.47
CLN3-208ENST00000561505 CHRDQ9H2X0 955 aa17.98■□□□□ 0.47
CLN3-208ENST00000561505 ZFP14Q9HCL3 533 aa17.98■□□□□ 0.47
CLN3-208ENST00000561505 CEP72Q9P209 647 aa17.98■□□□□ 0.47
CLN3-208ENST00000561505 CCDC169A6NNP5 214 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 M0QZQ0 153 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 ARNTLO00327 626 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 PRRG1O14668 218 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 TOM1L1O75674 476 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 OAZ2O95190 189 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 AARSP49588 968 aaKnown RBP eCLIP17.97■□□□□ 0.47
CLN3-208ENST00000561505 NBR1Q14596 966 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 ZPBP2Q6X784 338 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 KCNK18Q7Z418 384 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 CCDC83Q8IWF9 413 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 TMEM161BQ8NDZ6 487 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 SNX29Q8TEQ0 813 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 ATRIPQ8WXE1 791 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 SMARCD2Q92925 531 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 C18orf25Q96B23 403 aaPredicted RBP17.97■□□□□ 0.47
CLN3-208ENST00000561505 CORO1BQ9BR76 489 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 TRMT61BQ9BVS5 477 aaKnown RBP17.97■□□□□ 0.47
CLN3-208ENST00000561505 OXCT2Q9BYC2 517 aaPredicted RBP17.97■□□□□ 0.47
CLN3-208ENST00000561505 RAB34Q9BZG1 259 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 CYP4F11Q9HBI6 524 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 ZNF334Q9HCZ1 680 aaPredicted RBP17.97■□□□□ 0.47
CLN3-208ENST00000561505 KMT5AQ9NQR1 393 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 KCNG1Q9UIX4 513 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 NOL7Q9UMY1 257 aaKnown RBP17.97■□□□□ 0.47
CLN3-208ENST00000561505 PCDHB6Q9Y5E3 794 aa17.97■□□□□ 0.47
CLN3-208ENST00000561505 SEC24BO95487 1268 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 VNN2O95498 520 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 ADRB2P07550 413 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 LRPAP1P30533 357 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 OSTNP61366 133 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 MCL1Q07820 350 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 MTAPQ13126 283 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 VITQ6UXI7 678 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 APPL2Q8NEU8 664 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 DEPDC1BQ8WUY9 529 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 DDX12PQ92771 950 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 IRF7Q92985 503 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 ZBTB45Q96K62 511 aaPredicted RBP17.96■□□□□ 0.47
CLN3-208ENST00000561505 ZSCAN31Q96LW9 406 aaPredicted RBP17.96■□□□□ 0.47
CLN3-208ENST00000561505 ZSWIM3Q96MP5 696 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 TBC1D32Q96NH3 1257 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 PLEKHA5Q9HAU0 1116 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 PCDHB8Q9UN66 801 aa17.96■□□□□ 0.47
CLN3-208ENST00000561505 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.96■□□□□ 0.47
CLN3-208ENST00000561505 CITO14578 2027 aa17.95■□□□□ 0.46
CLN3-208ENST00000561505 TTC26A0AVF1 554 aa17.95■□□□□ 0.46
CLN3-208ENST00000561505 PSMC3P17980 439 aa17.95■□□□□ 0.46
CLN3-208ENST00000561505 SDHBP21912 280 aa17.95■□□□□ 0.46
CLN3-208ENST00000561505 CTXN3Q4LDR2 81 aa17.95■□□□□ 0.46
CLN3-208ENST00000561505 CYP4A22Q5TCH4 519 aa17.95■□□□□ 0.46
CLN3-208ENST00000561505 KRT79Q5XKE5 535 aa17.95■□□□□ 0.46
CLN3-208ENST00000561505 ZNF280DQ6N043 979 aa17.95■□□□□ 0.46
CLN3-208ENST00000561505 PDZD4Q76G19 769 aaPredicted RBP17.95■□□□□ 0.46
CLN3-208ENST00000561505 MFSD6LQ8IWD5 586 aa17.95■□□□□ 0.46
CLN3-208ENST00000561505 GPR88Q9GZN0 384 aa17.95■□□□□ 0.46
CLN3-208ENST00000561505 BRD9Q9H8M2 597 aa17.95■□□□□ 0.46
CLN3-208ENST00000561505 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.95■□□□□ 0.46
CLN3-208ENST00000561505 NUB1Q9Y5A7 615 aa17.95■□□□□ 0.46
CLN3-208ENST00000561505 PDCD11Q14690 1871 aaKnown RBP17.95■□□□□ 0.46
CLN3-208ENST00000561505 PP2D1A8MPX8 630 aa17.94■□□□□ 0.46
CLN3-208ENST00000561505 MAPTP10636 758 aaKnown RBP17.94■□□□□ 0.46
CLN3-208ENST00000561505 PLS3P13797 630 aa17.94■□□□□ 0.46
CLN3-208ENST00000561505 CYP3A5P20815 502 aa17.94■□□□□ 0.46
CLN3-208ENST00000561505 RSPO4Q2I0M5 234 aaPredicted RBP17.94■□□□□ 0.46
CLN3-208ENST00000561505 IQCEQ6IPM2 695 aa17.94■□□□□ 0.46
CLN3-208ENST00000561505 HS6ST3Q8IZP7 471 aa17.94■□□□□ 0.46
CLN3-208ENST00000561505 SYT2Q8N9I0 419 aaPredicted RBP17.94■□□□□ 0.46
CLN3-208ENST00000561505 E2F7Q96AV8 911 aa17.94■□□□□ 0.46
CLN3-208ENST00000561505 ZNF512Q96ME7 567 aaPredicted RBP17.94■□□□□ 0.46
CLN3-208ENST00000561505 KIF2CQ99661 725 aa17.94■□□□□ 0.46
CLN3-208ENST00000561505 TCHPQ9BT92 498 aa17.94■□□□□ 0.46
CLN3-208ENST00000561505 HAPLN2Q9GZV7 340 aa17.94■□□□□ 0.46
CLN3-208ENST00000561505 SH2B1Q9NRF2 756 aaPredicted RBP17.94■□□□□ 0.46
CLN3-208ENST00000561505 KCND2Q9NZV8 630 aa17.94■□□□□ 0.46
CLN3-208ENST00000561505 SMG5Q9UPR3 1016 aaKnown RBP17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms