RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 MYH11P35749 1972 aa12.72□□□□□ -0.37
USP3-220ENST00000561381 CACNA1IQ9P0X4 2223 aa12.72□□□□□ -0.37
USP3-220ENST00000561381 ARHGEF37A1IGU5 675 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 PRRG1O14668 218 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 TOM1L1O75674 476 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 ABLIM3O94929 683 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 PLA2G4BP0C869 781 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 CXCL8P10145 99 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 CEBPBP17676 345 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 MCM4P33991 863 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 STARD6P59095 220 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 STRN3Q13033 797 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 MRPL58Q14197 206 aaKnown RBP12.71□□□□□ -0.37
USP3-220ENST00000561381 TMEM119Q4V9L6 283 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 ARSHQ5FYA8 562 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 ADSSL1Q8N142 457 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 PJA1Q8NG27 643 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 TIPINQ9BVW5 301 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 PLA2G2FQ9BZM2 168 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 DAXXQ9UER7 740 aaPredicted RBP12.71□□□□□ -0.37
USP3-220ENST00000561381 MRPS23Q9Y3D9 190 aaKnown RBP12.71□□□□□ -0.37
USP3-220ENST00000561381 MTF2Q9Y483 593 aaPredicted RBP12.71□□□□□ -0.37
USP3-220ENST00000561381 NUB1Q9Y5A7 615 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 R4GN57 208 aa12.71□□□□□ -0.37
USP3-220ENST00000561381 PDCD11Q14690 1871 aaKnown RBP12.7□□□□□ -0.38
USP3-220ENST00000561381 H3BQV1 296 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 SYN3O14994 580 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 ATF2P15336 505 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 ELF1P32519 619 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 RPL9P32969 192 aaKnown RBP12.7□□□□□ -0.38
USP3-220ENST00000561381 SMTNP53814 917 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 MCL1Q07820 350 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 MLF2Q15773 248 aaPredicted RBP12.7□□□□□ -0.38
USP3-220ENST00000561381 CTXN3Q4LDR2 81 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 SLC44A4Q53GD3 710 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 ZBTB41Q5SVQ8 909 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 RTL10Q7L3V2 364 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 DDX12PQ92771 950 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 TCEAL4Q96EI5 215 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 CDK5RAP3Q96JB5 506 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 SUSD3Q96L08 255 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 TBC1D32Q96NH3 1257 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 CORO1BQ9BR76 489 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 CYP4F11Q9HBI6 524 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 KIF3AQ9Y496 699 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 DMDP11532 3685 aa12.7□□□□□ -0.38
USP3-220ENST00000561381 KANSL1LA0AUZ9 987 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 H7C4K7 107 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 CLDN3O15551 220 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 LRG1P02750 347 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 PTPN2P17706 415 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 CD72P21854 359 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 TNFSF9P41273 254 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 CCR2P41597 374 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 MATR3P43243 847 aaKnown RBP eCLIP12.69□□□□□ -0.38
USP3-220ENST00000561381 GUCY2FP51841 1108 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 NCKAP1LP55160 1127 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 GRIN1Q05586 938 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 ADCY1Q08828 1119 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 PRSS36Q5K4E3 855 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 ARL6IP4Q66PJ3 421 aaKnown RBP12.69□□□□□ -0.38
USP3-220ENST00000561381 TANGO2Q6ICL3 276 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 ZPBP2Q6X784 338 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 C1orf210Q8IVY1 113 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 HS6ST3Q8IZP7 471 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 REEP2Q9BRK0 252 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 DDX23Q9BUQ8 820 aaKnown RBP12.69□□□□□ -0.38
USP3-220ENST00000561381 TIMM13Q9Y5L4 95 aaPredicted RBP12.69□□□□□ -0.38
USP3-220ENST00000561381 INSL5Q9Y5Q6 135 aa12.69□□□□□ -0.38
USP3-220ENST00000561381 TTC26A0AVF1 554 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 SP9P0CG40 484 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 DHX8Q14562 1220 aaKnown RBP12.68□□□□□ -0.38
USP3-220ENST00000561381 UBXN2BQ14CS0 331 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 RNF19BQ6ZMZ0 732 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 HAUS6Q7Z4H7 955 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 GPBP1Q86WP2 473 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 TCEAL8Q8IYN2 117 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 MAML2Q8IZL2 1156 aaPredicted RBP12.68□□□□□ -0.38
USP3-220ENST00000561381 KCNG4Q8TDN1 519 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 BICD1Q96G01 975 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 SHDQ96IW2 340 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 AVENQ9NQS1 362 aaPredicted RBP12.68□□□□□ -0.38
USP3-220ENST00000561381 BLOC1S4Q9NUP1 217 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 GDE1Q9NZC3 331 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 KCND2Q9NZV8 630 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 CEP72Q9P209 647 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 MIA3Q5JRA6 1907 aa12.68□□□□□ -0.38
USP3-220ENST00000561381 FAM170BA6NMN3 283 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 LACTBL1A8MY62 500 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 PPEF2O14830 753 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 FAM189A1O60320 539 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 ECI2O75521 394 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 VNN2O95498 520 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 CLTAP09496 248 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 OR4Q2P0C623 313 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 GJA1P17302 382 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 FCARP24071 287 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 LRPAP1P30533 357 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 LIG4P49917 911 aa12.67□□□□□ -0.38
USP3-220ENST00000561381 PFKPQ01813 784 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms