RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 CUL2Q13617 745 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 C10orf76Q5T2E6 689 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 E4F1Q66K89 784 aaPredicted RBP11.06□□□□□ -0.64
USP3-219ENST00000561326 RAD9BQ6WBX8 426 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 SLC24A5Q71RS6 500 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 FAM71AQ8IYT1 594 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 C1orf127Q8N9H9 656 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 SHC3Q92529 594 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 APBB2Q92870 758 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 HPDLQ96IR7 371 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 KREMEN1Q96MU8 473 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.06□□□□□ -0.64
USP3-219ENST00000561326 DNAI2Q9GZS0 605 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 NIF3L1Q9GZT8 377 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 HIPK3Q9H422 1215 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 FAM124BQ9H5Z6 455 aaPredicted RBP11.06□□□□□ -0.64
USP3-219ENST00000561326 HAUS4Q9H6D7 363 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 RGS18Q9NS28 235 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 TRMT1Q9NXH9 659 aaKnown RBP11.06□□□□□ -0.64
USP3-219ENST00000561326 KLK14Q9P0G3 267 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 AGAP1Q9UPQ3 857 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 PPP2R2CQ9Y2T4 447 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 ADGRG1Q9Y653 693 aa11.06□□□□□ -0.64
USP3-219ENST00000561326 MEFVO15553 781 aaPredicted RBP11.05□□□□□ -0.64
USP3-219ENST00000561326 LRRN2O75325 713 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 STAU1O95793 577 aaKnown RBP11.05□□□□□ -0.64
USP3-219ENST00000561326 THP07101 528 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 POLR2BP30876 1174 aaKnown RBP11.05□□□□□ -0.64
USP3-219ENST00000561326 PNPLA4P41247 253 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 KIF11P52732 1056 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 TTC3P53804 2025 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 FAAP100Q0VG06 881 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 BMS1Q14692 1282 aaKnown RBP11.05□□□□□ -0.64
USP3-219ENST00000561326 MTF1Q14872 753 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 WDR72Q3MJ13 1102 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 HGSNATQ68CP4 663 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 TRAF7Q6Q0C0 670 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 TOGARAM2Q6ZUX3 1019 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 KIAA1328Q86T90 577 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 LRRC52Q8N7C0 313 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 PAWRQ96IZ0 340 aaKnown RBP11.05□□□□□ -0.64
USP3-219ENST00000561326 TANC1Q9C0D5 1861 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 RNF39Q9H2S5 420 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 VRTNQ9H8Y1 702 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 CYP3A43Q9HB55 503 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 SPTLC3Q9NUV7 552 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 TMEM39AQ9NV64 488 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 AJAP1Q9UKB5 411 aaPredicted RBP11.05□□□□□ -0.64
USP3-219ENST00000561326 ATP11BQ9Y2G3 1177 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 NUB1Q9Y5A7 615 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 PCDHB4Q9Y5E5 795 aa11.05□□□□□ -0.64
USP3-219ENST00000561326 ARL5CA6NH57 179 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 KIF2AO00139 706 aaPredicted RBP11.04□□□□□ -0.64
USP3-219ENST00000561326 CYP26A1O43174 497 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 MGEA5O60502 916 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 LCA5LO95447 670 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 PLEKP08567 350 aaPredicted RBP11.04□□□□□ -0.64
USP3-219ENST00000561326 PDE6CP51160 858 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 TNNC1P63316 161 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 PTPN14Q15678 1187 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 SLC18A3Q16572 532 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 TRIM60Q495X7 471 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 ARHGAP29Q52LW3 1261 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 PLEKHG4Q58EX7 1191 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 SPOPLQ6IQ16 392 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 ECHDC2Q86YB7 292 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 RNF169Q8NCN4 708 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 FAM84AQ96KN4 292 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 ZNF560Q96MR9 790 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 ZMAT2Q96NC0 199 aaKnown RBP11.04□□□□□ -0.64
USP3-219ENST00000561326 GPR88Q9GZN0 384 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 XYLT2Q9H1B5 865 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 TSPYL2Q9H2G4 693 aaPredicted RBP11.04□□□□□ -0.64
USP3-219ENST00000561326 RSAD1Q9HA92 442 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 APOBEC3GQ9HC16 384 aaKnown RBP11.04□□□□□ -0.64
USP3-219ENST00000561326 KANSL3Q9P2N6 904 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 NXF1Q9UBU9 619 aaKnown RBP11.04□□□□□ -0.64
USP3-219ENST00000561326 ADAMTS1Q9UHI8 967 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 SIX4Q9UIU6 781 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 MICAL3Q7RTP6 2002 aa11.04□□□□□ -0.64
USP3-219ENST00000561326 ANO9A1A5B4 782 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 C9IYK1 514 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 RBAK-RBAKDNI3L0D1 243 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 KRT86O43790 486 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 CLTBP09497 229 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 PAX3P23760 479 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 RPL9P32969 192 aaKnown RBP11.03□□□□□ -0.64
USP3-219ENST00000561326 RFC2P35250 354 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 CLCN1P35523 988 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 MAGEA1P43355 309 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 FAM189BP81408 668 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 KIF5AQ12840 1032 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 MBTPS1Q14703 1052 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 ASTE1Q2TB18 679 aaPredicted RBP11.03□□□□□ -0.64
USP3-219ENST00000561326 SV2CQ496J9 727 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 GLRA4Q5JXX5 417 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 C9orf57Q5W0N0 161 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 TMEM270Q6UE05 265 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 GLB1LQ6UWU2 654 aa11.03□□□□□ -0.64
USP3-219ENST00000561326 ZNF571Q7Z3V5 609 aaPredicted RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms