RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 ZBTB12Q9Y330 459 aaPredicted RBP13.86□□□□□ -0.19
CSPG4P11-201ENST00000560634 A0A1W2PQJ5 194 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 CCT8L1PA6NM43 557 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 DFFAO00273 331 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 EIF3DO15371 548 aaKnown RBP eCLIP13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 NMT1P30419 496 aaKnown RBP13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 PSMD7P51665 324 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 ACCSLQ4AC99 568 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 JAMLQ86YT9 394 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 APLFQ8IW19 511 aaPredicted RBP13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 MMGT1Q8N4V1 131 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 PTPRN2Q92932 1015 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 SPATA33Q96N06 139 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 OSBPL8Q9BZF1 889 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 TMEM161AQ9NX61 479 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 ARHGEF38Q9NXL2 777 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 PCDHB8Q9UN66 801 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 EFCAB6Q5THR3 1501 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 LRRIQ3A6PVS8 624 aaPredicted RBP13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 PHF20L1A8MW92 1017 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 B2RBV5 119 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 P4HA2O15460 535 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 MTSS1O43312 755 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 YWHABP31946 246 aaKnown RBP13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 DPYDQ12882 1025 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 DCAF4L1Q3SXM0 396 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 NUDT18Q6ZVK8 323 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 IRX2Q9BZI1 471 aaPredicted RBP13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 SEPT3Q9UH03 358 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 PCDHB2Q9Y5E7 798 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 F5H423 210 aaPredicted RBP13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 ADCY3O60266 1144 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 PRKCBP05771 671 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 CENPCQ03188 943 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 WLSQ5T9L3 541 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 PLEKHM3Q6ZWE6 761 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 TRIM69Q86WT6 500 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 TMA16Q96EY4 203 aaKnown RBP13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 ERP44Q9BS26 406 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 TRIM51Q9BSJ1 452 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 THTPAQ9BU02 230 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 ISCUQ9H1K1 167 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 RSAD1Q9HA92 442 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 DYRK4Q9NR20 520 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 SCN3BQ9NY72 215 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 MAP3K20Q9NYL2 800 aaKnown RBP13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 M0R3G1 203 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 GSNP06396 782 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 MYL2P10916 166 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 IRAK1P51617 712 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 STAT5BP51692 787 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 DEPDC1Q5TB30 811 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 BTNL9Q6UXG8 535 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 ATXN7L3BQ96GX2 97 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 PRPF18Q99633 342 aaKnown RBP13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 ISCA1Q9BUE6 129 aa13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 XPO7Q9UIA9 1087 aaKnown RBP13.85□□□□□ -0.19
CSPG4P11-201ENST00000560634 hCG_2014768A0A024R1R8 64 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 MAGEA4P43358 317 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 HSPA13P48723 471 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 LONRF1Q17RB8 773 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 LDHDQ86WU2 507 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 ELOA2Q8IYF1 753 aaPredicted RBP13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 RNF149Q8NC42 400 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 HNRNPLLQ8WVV9 542 aaKnown RBP13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 SYN2Q92777 582 aaPredicted RBP13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 JPH1Q9HDC5 661 aaPredicted RBP13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 SLC30A1Q9Y6M5 507 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 KRT87PA6NCN2 255 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 ZNF185O15231 689 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 NDUFS3O75489 264 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 SKOR1P84550 965 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 PTK7Q13308 1070 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 ACBD5Q5T8D3 534 aaPredicted RBP13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 C12orf60Q5U649 245 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 ZNF772Q68DY9 489 aaPredicted RBP13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 APOBEC3FQ8IUX4 373 aaKnown RBP13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 C4orf33Q8N1A6 199 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 C2orf69Q8N8R5 385 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 C3orf20Q8ND61 904 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 ARHGEF1Q92888 912 aaKnown RBP13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 TMEM120BA0PK00 339 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 E7ENQ6 273 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 WEE2P0C1S8 567 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 FXR1P51114 621 aaKnown RBP eCLIP13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 COBLL1Q53SF7 1204 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 ZNF677Q86XU0 584 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 SHCBP1Q8NEM2 672 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 GPR101Q96P66 508 aaPredicted RBP13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 PHF20Q9BVI0 1012 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 MOV10L1Q9BXT6 1211 aaKnown RBP13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 RIC8BQ9NVN3 520 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 SELENONQ9NZV5 590 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 NDUFA13Q9P0J0 144 aa13.84□□□□□ -0.19
CSPG4P11-201ENST00000560634 APOA4P06727 396 aa13.83□□□□□ -0.19
CSPG4P11-201ENST00000560634 POLBP06746 335 aa13.83□□□□□ -0.19
CSPG4P11-201ENST00000560634 LCP1P13796 627 aa13.83□□□□□ -0.19
CSPG4P11-201ENST00000560634 CPB1P15086 417 aa13.83□□□□□ -0.19
CSPG4P11-201ENST00000560634 PDK1Q15118 436 aa13.83□□□□□ -0.19
CSPG4P11-201ENST00000560634 CYFIP1Q7L576 1253 aa13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms