RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 GCLCP48506 637 aaPredicted RBP5.67□□□□□ -1.5
LDLR-209ENST00000558528 AFF1P51825 1210 aaKnown RBP5.67□□□□□ -1.5
LDLR-209ENST00000558528 RBM10P98175 930 aaKnown RBP5.67□□□□□ -1.5
LDLR-209ENST00000558528 AMPD2Q01433 879 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 CTBSQ01459 385 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 GRM3Q14832 879 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 CALCRLQ16602 461 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 INF2Q27J81 1249 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 SHROOM1Q2M3G4 852 aaPredicted RBP5.67□□□□□ -1.5
LDLR-209ENST00000558528 LRIT3Q3SXY7 679 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 USH1GQ495M9 461 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 Q4G0T1 1027 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 RESP18Q5W5W9 173 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 GADL1Q6ZQY3 521 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 RNF207Q6ZRF8 634 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 NIPA1Q7RTP0 329 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 UBE2Q1Q7Z7E8 422 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 ANKRD23Q86SG2 305 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 NLRX1Q86UT6 975 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 ZNF354CQ86Y25 554 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 CEP57L1Q8IYX8 460 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 CCDC155Q8N6L0 562 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 CHST14Q8NCH0 376 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 CNNM3Q8NE01 707 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 ACRBPQ8NEB7 543 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 ERMNQ8TAM6 284 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 BAHD1Q8TBE0 780 aaPredicted RBP5.67□□□□□ -1.5
LDLR-209ENST00000558528 GPT2Q8TD30 523 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 DPF3Q92784 378 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 OPTNQ96CV9 577 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 WDR89Q96FK6 387 aaPredicted RBP5.67□□□□□ -1.5
LDLR-209ENST00000558528 CALML4Q96GE6 196 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 C1orf159Q96HA4 380 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 CDHR1Q96JP9 859 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 PGBD1Q96JS3 809 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 ASPNQ9BXN1 380 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 CELF4Q9BZC1 486 aaKnown RBP5.67□□□□□ -1.5
LDLR-209ENST00000558528 CCSER1Q9C0I3 900 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 NAT10Q9H0A0 1025 aaKnown RBP5.67□□□□□ -1.5
LDLR-209ENST00000558528 NT5C3AQ9H0P0 336 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 ACAD9Q9H845 621 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 MKS1Q9NXB0 559 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 DACT1Q9NYF0 836 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 ADD3Q9UEY8 706 aaKnown RBP5.67□□□□□ -1.5
LDLR-209ENST00000558528 DDX25Q9UHL0 483 aaKnown RBP5.67□□□□□ -1.5
LDLR-209ENST00000558528 FBXO2Q9UK22 296 aaPredicted RBP5.67□□□□□ -1.5
LDLR-209ENST00000558528 KCNH3Q9ULD8 1083 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 RNF112Q9ULX5 631 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 PHTF1Q9UMS5 762 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 PFASO15067 1338 aa5.67□□□□□ -1.5
LDLR-209ENST00000558528 POLR2AP24928 1970 aaKnown RBP5.66□□□□□ -1.5
LDLR-209ENST00000558528 BLACEA4D250 179 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 GOLGA6L3A6NEY3 463 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 MANSC4A6NHS7 340 aaPredicted RBP5.66□□□□□ -1.5
LDLR-209ENST00000558528 SHOXO15266 292 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 STRNO43815 780 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 DKC1O60832 514 aaKnown RBP eCLIP5.66□□□□□ -1.5
LDLR-209ENST00000558528 PPP1R11O60927 126 aaPredicted RBP5.66□□□□□ -1.5
LDLR-209ENST00000558528 DTNBO60941 627 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 SMC2O95347 1197 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 ASGR2P07307 311 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 BCRP11274 1271 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 ITIH2P19823 946 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 MUTP22033 750 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 ALAS2P22557 587 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 CCT5P48643 541 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 HSD17B4P51659 736 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 GPR85P60893 370 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 TESK1Q15569 626 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 ARHGAP44Q17R89 818 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 UVSSAQ2YD98 709 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 ZSCAN23Q3MJ62 389 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 FAM47CQ5HY64 1035 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 KIAA1755Q5JYT7 1200 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 KRT79Q5XKE5 535 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 HAUS3Q68CZ6 603 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 USP17L6PQ6QN14 398 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 LRSAM1Q6UWE0 723 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 TRIM67Q6ZTA4 783 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 CHST15Q7LFX5 561 aaPredicted RBP5.66□□□□□ -1.5
LDLR-209ENST00000558528 RIOX2Q8IUF8 465 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 ZC3H7AQ8IWR0 971 aaKnown RBP5.66□□□□□ -1.5
LDLR-209ENST00000558528 FAM186BQ8IYM0 893 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 NXPE1Q8N323 547 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 EFHBQ8N7U6 833 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 C4orf32Q8N8J7 132 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 MFSD2AQ8NA29 543 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 SHCBP1Q8NEM2 672 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 ENGASEQ8NFI3 743 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 ADCY4Q8NFM4 1077 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 DNERQ8NFT8 737 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 RASSF8Q8NHQ8 419 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 NSUN6Q8TEA1 469 aaKnown RBP5.66□□□□□ -1.5
LDLR-209ENST00000558528 SLC5A5Q92911 643 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 SHISA4Q96DD7 197 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 CDK5RAP3Q96JB5 506 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 MBOAT7Q96N66 472 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 GUCD1Q96NT3 240 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 IWS1Q96ST2 819 aa5.66□□□□□ -1.5
LDLR-209ENST00000558528 CLSTN2Q9H4D0 955 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms