RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 PMM2O15305 246 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 P4HA2O15460 535 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 CLSTN1O94985 981 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 CST3P01034 146 aaPredicted RBP10.36□□□□□ -0.75
CUX1-216ENST00000558469 HLA-DRAP01903 254 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 TPM3P06753 285 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 POLR2BP30876 1174 aaKnown RBP10.36□□□□□ -0.75
CUX1-216ENST00000558469 PIK3CAP42336 1068 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 TUSC3Q13454 348 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 NCOA4Q13772 614 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 BTG3Q14201 252 aaPredicted RBP10.36□□□□□ -0.75
CUX1-216ENST00000558469 PTPN21Q16825 1174 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 C9orf57Q5W0N0 161 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 GBP6Q6ZN66 633 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 LRRC43Q8N309 656 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 TAS1R2Q8TE23 839 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 RSPH1Q8WYR4 309 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 RABGGTAQ92696 567 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 SEMA4DQ92854 862 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 SCUBE2Q9NQ36 999 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.36□□□□□ -0.756e-7■■■■■ 175.8
CUX1-216ENST00000558469 RAB20Q9NX57 234 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 GCNT4Q9P109 453 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 HCSTQ9UBK5 93 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 DNAJB4Q9UDY4 337 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 SIX4Q9UIU6 781 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 R3HCC1Q9Y3T6 440 aaKnown RBP10.36□□□□□ -0.75
CUX1-216ENST00000558469 INSL6Q9Y581 213 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 PLXNA4Q9HCM2 1894 aa10.36□□□□□ -0.75
CUX1-216ENST00000558469 ANO9A1A5B4 782 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 GTPBP10A4D1E9 387 aaKnown RBP10.35□□□□□ -0.75
CUX1-216ENST00000558469 PPEF2O14830 753 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 TLL1O43897 1013 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 B4GALT3O60512 393 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 ZC3H11AO75152 810 aaKnown RBP eCLIP10.35□□□□□ -0.753e-6■■■■□ 25.7
CUX1-216ENST00000558469 LRRN2O75325 713 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 SLC9A1P19634 815 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 LRPAP1P30533 357 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 RPL9P32969 192 aaKnown RBP10.35□□□□□ -0.75
CUX1-216ENST00000558469 OR1G1P47890 313 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 MRE11P49959 708 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 CLCNKBP51801 687 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 RABGGTBP53611 331 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 MYL6P60660 151 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 RBP5P82980 135 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 HTRA4P83105 476 aaPredicted RBP10.35□□□□□ -0.75
CUX1-216ENST00000558469 DSC1Q08554 894 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 UPP1Q16831 310 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 EXOC3L4Q17RC7 722 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 EPC2Q52LR7 807 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 SPOUT1Q5T280 376 aaKnown RBP10.35□□□□□ -0.75
CUX1-216ENST00000558469 COLGALT2Q8IYK4 626 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 CMTR2Q8IYT2 770 aaKnown RBP10.35□□□□□ -0.75
CUX1-216ENST00000558469 EHBP1Q8NDI1 1231 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 CXorf38Q8TB03 319 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 ELMO3Q96BJ8 720 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 PCMTD1Q96MG8 357 aaPredicted RBP10.35□□□□□ -0.75
CUX1-216ENST00000558469 UROC1Q96N76 676 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 RAD9AQ99638 391 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 PAAF1Q9BRP4 392 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 PI4K2AQ9BTU6 479 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 CWH43Q9H720 699 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 NRDE2Q9H7Z3 1164 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 RC3H2Q9HBD1 1191 aaKnown RBP10.35□□□□□ -0.75
CUX1-216ENST00000558469 COQ4Q9Y3A0 265 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.35□□□□□ -0.75
CUX1-216ENST00000558469 LAMA2P24043 3122 aaKnown RBP10.35□□□□□ -0.75
CUX1-216ENST00000558469 VWA8A3KMH1 1905 aa10.35□□□□□ -0.75
CUX1-216ENST00000558469 GRXCR1A8MXD5 290 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 PODXLO00592 558 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 PIRO00625 290 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 ALDH2P05091 517 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 IGFBP6P24592 240 aaPredicted RBP10.34□□□□□ -0.75
CUX1-216ENST00000558469 PON1P27169 355 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 BMP8BP34820 402 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 KLK7P49862 253 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 ZNF75DP51815 510 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 BCAR1P56945 870 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 APBA1Q02410 837 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 KCNMA1Q12791 1236 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 LRMPQ12912 555 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 MYO1EQ12965 1108 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 SYCP1Q15431 976 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 SGSM1Q2NKQ1 1148 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 WDR44Q5JSH3 913 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 FAM109BQ6ICB4 259 aaPredicted RBP10.34□□□□□ -0.75
CUX1-216ENST00000558469 TRIM65Q6PJ69 517 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 CCDC150Q8NCX0 1101 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 LMO3Q8TAP4 145 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 DDX27Q96GQ7 796 aaKnown RBP10.34□□□□□ -0.75
CUX1-216ENST00000558469 HPDLQ96IR7 371 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 ERGIC2Q96RQ1 377 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 LSM14BQ9BX40 385 aaKnown RBP10.34□□□□□ -0.75
CUX1-216ENST00000558469 IMPG2Q9BZV3 1241 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 INTS2Q9H0H0 1204 aaKnown RBP10.34□□□□□ -0.75
CUX1-216ENST00000558469 FAN1Q9Y2M0 1017 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 MRPL42Q9Y6G3 142 aaKnown RBP10.34□□□□□ -0.75
CUX1-216ENST00000558469 TSC2P49815 1807 aa10.34□□□□□ -0.75
CUX1-216ENST00000558469 A0A1W2PQC6 194 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 LCHNA4D1U4 455 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms