RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 CETPP11597 493 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 KRT5P13647 590 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 RRM1P23921 792 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 JAK3P52333 1124 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 PEX3P56589 373 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 WDR4P57081 412 aaKnown RBP17.27■□□□□ 0.35
SHMT2-231ENST00000557433 JAG1P78504 1218 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 CYP24A1Q07973 514 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 MOGSQ13724 837 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 BLMHQ13867 455 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 TMED2Q15363 201 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 GRIPAP1Q4V328 841 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 TMEM63BQ5T3F8 832 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 LDHDQ86WU2 507 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 TAS1R2Q8TE23 839 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 PRCCQ92733 491 aaPredicted RBP17.27■□□□□ 0.35
SHMT2-231ENST00000557433 CSRNP1Q96S65 589 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 PHACTR1Q9C0D0 580 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 AGO4Q9HCK5 861 aaKnown RBP17.27■□□□□ 0.35
SHMT2-231ENST00000557433 ACP6Q9NPH0 428 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 C1orf112Q9NSG2 853 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 MAP3K20Q9NYL2 800 aaKnown RBP17.27■□□□□ 0.35
SHMT2-231ENST00000557433 FETUBQ9UGM5 382 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 SLC24A2Q9UI40 661 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 BCS1LQ9Y276 419 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 UBIAD1Q9Y5Z9 338 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 MYPNQ86TC9 1320 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 SLX4Q8IY92 1834 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 ANKRD31Q8N7Z5 1873 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 GOLGA8IPA6NC78 632 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 GOLGA8JA6NMD2 632 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 LMNAP02545 664 aaKnown RBP17.26■□□□□ 0.35
SHMT2-231ENST00000557433 CNGA1P29973 690 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 ADSSP30520 456 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 RNASELQ05823 741 aaKnown RBP17.26■□□□□ 0.35
SHMT2-231ENST00000557433 DMP1Q13316 513 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-231ENST00000557433 TRIP13Q15645 432 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-231ENST00000557433 ZC3H12AQ5D1E8 599 aaKnown RBP17.26■□□□□ 0.35
SHMT2-231ENST00000557433 MCF2L2Q86YR7 1114 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 ANKLE1Q8NAG6 615 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 TMEM161BQ8NDZ6 487 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 CCDC127Q96BQ5 260 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 SMC6Q96SB8 1091 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 MYLK2Q9H1R3 596 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.26■□□□□ 0.35
SHMT2-231ENST00000557433 TBK1Q9UHD2 729 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 PHTF1Q9UMS5 762 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 R3HDM2Q9Y2K5 976 aaKnown RBP17.26■□□□□ 0.35
SHMT2-231ENST00000557433 LRRC42Q9Y546 428 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 RGPD3A6NKT7 1758 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-231ENST00000557433 RGPD4Q7Z3J3 1758 aa17.26■□□□□ 0.35
SHMT2-231ENST00000557433 DNALI1O14645 258 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-231ENST00000557433 KIF3CO14782 793 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 ATP2A1O14983 1001 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 EDF1O60869 148 aaKnown RBP17.25■□□□□ 0.35
SHMT2-231ENST00000557433 SMNDC1O75940 238 aaKnown RBP eCLIP17.25■□□□□ 0.356e-6■□□□□ 8.8
SHMT2-231ENST00000557433 NEBLO76041 1014 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 GARTP22102 1010 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 CALB2P22676 271 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 PAX7P23759 505 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 SFNP31947 248 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 PSMC5P62195 406 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 PCNX4Q63HM2 1172 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 SV2AQ7L0J3 742 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 MON1BQ7L1V2 547 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 ENDOVQ8N8Q3 282 aaKnown RBP17.25■□□□□ 0.35
SHMT2-231ENST00000557433 RBM41Q96IZ5 413 aaKnown RBP17.25■□□□□ 0.35
SHMT2-231ENST00000557433 NTPCRQ9BSD7 190 aaKnown RBP17.25■□□□□ 0.35
SHMT2-231ENST00000557433 TUBB6Q9BUF5 446 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 KIAA1586Q9HCI6 787 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 SAR1AQ9NR31 198 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 UMODL1Q5DID0 1318 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 DDX39AO00148 427 aaKnown RBP17.25■□□□□ 0.35
SHMT2-231ENST00000557433 PPP1R12AO14974 1030 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-231ENST00000557433 MCL1Q07820 350 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 MORF4L2Q15014 288 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 CCDC142Q17RM4 750 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 TKFCQ3LXA3 575 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 GSTA5Q7RTV2 222 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 RCOR2Q8IZ40 523 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 ZSWIM2Q8NEG5 633 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 RDM1Q8NG50 284 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 LRRC8CQ8TDW0 803 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 ERP27Q96DN0 273 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 MASTLQ96GX5 879 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 HERPUD2Q9BSE4 406 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 TRABDQ9H4I3 376 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 DBNDD1Q9H9R9 158 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 DNAJC17Q9NVM6 304 aaKnown RBP17.25■□□□□ 0.35
SHMT2-231ENST00000557433 CYP39A1Q9NYL5 469 aa17.25■□□□□ 0.35
SHMT2-231ENST00000557433 DRG1Q9Y295 367 aaKnown RBP17.25■□□□□ 0.35
SHMT2-231ENST00000557433 A8MUI8 341 aa17.24■□□□□ 0.35
SHMT2-231ENST00000557433 H0YCG3 227 aa17.24■□□□□ 0.35
SHMT2-231ENST00000557433 ZBED4O75132 1171 aa17.24■□□□□ 0.35
SHMT2-231ENST00000557433 FDX1P10109 184 aa17.24■□□□□ 0.35
SHMT2-231ENST00000557433 GNAZP19086 355 aa17.24■□□□□ 0.35
SHMT2-231ENST00000557433 ECE1P42892 770 aa17.24■□□□□ 0.35
SHMT2-231ENST00000557433 EAPPQ56P03 285 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-231ENST00000557433 SLC45A4Q5BKX6 768 aa17.24■□□□□ 0.35
SHMT2-231ENST00000557433 CAPRIN2Q6IMN6 1127 aaKnown RBP17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 115.3 ms