RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SLC28A3Q9HAS3 691 aa13.84□□□□□ -0.19
SHMT2-227ENST00000557269 ITGA11Q9UKX5 1188 aa13.84□□□□□ -0.19
SHMT2-227ENST00000557269 AGAP1Q9UPQ3 857 aa13.84□□□□□ -0.19
SHMT2-227ENST00000557269 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.84□□□□□ -0.19
SHMT2-227ENST00000557269 LAMA3Q16787 3333 aa13.84□□□□□ -0.19
SHMT2-227ENST00000557269 SMTNL1A8MU46 457 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 C5orf67F2Z3F1 127 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 I3L4J1 428 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 RFXAPO00287 272 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 XPOTO43592 962 aaKnown RBP13.83□□□□□ -0.2
SHMT2-227ENST00000557269 FGF18O76093 207 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 CAVIN2O95810 425 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 EFEMP2O95967 443 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 KRT19P08727 400 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 MTIF2P46199 727 aaKnown RBP13.83□□□□□ -0.2
SHMT2-227ENST00000557269 BRCC3P46736 316 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 FMO5P49326 533 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 MYL6P60660 151 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 KCNH2Q12809 1159 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 BIRC3Q13489 604 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 KRT31Q15323 416 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 HABP4Q5JVS0 413 aaKnown RBP13.83□□□□□ -0.2
SHMT2-227ENST00000557269 TAS1R1Q7RTX1 841 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 APTXQ7Z2E3 356 aaKnown RBP13.83□□□□□ -0.2
SHMT2-227ENST00000557269 FAM114A1Q8IWE2 563 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 ARNTL2Q8WYA1 636 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 SEMA4DQ92854 862 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 TUBGCP2Q9BSJ2 902 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 COLEC11Q9BWP8 271 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 GPR62Q9BZJ7 368 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 RBSNQ9H1K0 784 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 TTYH1Q9H313 450 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-227ENST00000557269 TMEM8AQ9HCN3 771 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 ALG13Q9NP73 1137 aaKnown RBP13.83□□□□□ -0.2
SHMT2-227ENST00000557269 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.83□□□□□ -0.21e-9■■■■■ 76.9
SHMT2-227ENST00000557269 AAASQ9NRG9 546 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 TAB2Q9NYJ8 693 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 SPG21Q9NZD8 308 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 MAGEC2Q9UBF1 373 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-227ENST00000557269 PCDHB12Q9Y5F1 795 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 TRIOBPQ9H2D6 2365 aa13.83□□□□□ -0.2
SHMT2-227ENST00000557269 NLRC5Q86WI3 1866 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 CHD9Q3L8U1 2897 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 BECN2A8MW95 431 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 TMEM189-UBE2V1I3L0A0 370 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 GRM6O15303 877 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 PHACTR2O75167 634 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 HLA-DRAP01903 254 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 DNAJB1P25685 340 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 EEF1GP26641 437 aaKnown RBP13.82□□□□□ -0.2
SHMT2-227ENST00000557269 GTF2H1P32780 548 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 AP3M2P53677 418 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 LILRA4P59901 499 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 RBP5P82980 135 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 NCOA4Q13772 614 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 TIGD5Q53EQ6 642 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 USP37Q86T82 979 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 B3GALT6Q96L58 329 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 PI4K2AQ9BTU6 479 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 PLVAPQ9BX97 442 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 XYLT2Q9H1B5 865 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 ZNF576Q9H609 170 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 LIMA1Q9UHB6 759 aaKnown RBP13.82□□□□□ -0.2
SHMT2-227ENST00000557269 ADAM28Q9UKQ2 775 aa13.82□□□□□ -0.2
SHMT2-227ENST00000557269 STX10O60499 249 aa13.81□□□□□ -0.2
SHMT2-227ENST00000557269 TADA2AO75478 443 aa13.81□□□□□ -0.2
SHMT2-227ENST00000557269 AFPP02771 609 aaKnown RBP13.81□□□□□ -0.2
SHMT2-227ENST00000557269 PRKCSHP14314 528 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-227ENST00000557269 MXI1P50539 228 aa13.81□□□□□ -0.2
SHMT2-227ENST00000557269 PLCB3Q01970 1234 aa13.81□□□□□ -0.2
SHMT2-227ENST00000557269 CAMK1Q14012 370 aa13.81□□□□□ -0.2
SHMT2-227ENST00000557269 MAN2A1Q16706 1144 aa13.81□□□□□ -0.2
SHMT2-227ENST00000557269 VWA3BQ502W6 1294 aa13.81□□□□□ -0.2
SHMT2-227ENST00000557269 KRT39Q6A163 491 aa13.81□□□□□ -0.2
SHMT2-227ENST00000557269 RNF168Q8IYW5 571 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-227ENST00000557269 FBXO22Q8NEZ5 403 aa13.81□□□□□ -0.2
SHMT2-227ENST00000557269 SPPL3Q8TCT6 385 aa13.81□□□□□ -0.2
SHMT2-227ENST00000557269 HPDLQ96IR7 371 aa13.81□□□□□ -0.2
SHMT2-227ENST00000557269 SAMD11Q96NU1 681 aa13.81□□□□□ -0.2
SHMT2-227ENST00000557269 VPS16Q9H269 839 aa13.81□□□□□ -0.2
SHMT2-227ENST00000557269 RWDD3Q9Y3V2 267 aa13.81□□□□□ -0.2
SHMT2-227ENST00000557269 PLXNA4Q9HCM2 1894 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 SCN1AP35498 2009 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 LRRC10BA6NIK2 292 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 H3BNC9 293 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 LPXNO60711 386 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 RB1P06400 928 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 CDK11BP21127 795 aaKnown RBP13.8□□□□□ -0.2
SHMT2-227ENST00000557269 PPM1AP35813 382 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 PIK3CAP42336 1068 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 AARSP49588 968 aaKnown RBP eCLIP13.8□□□□□ -0.2
SHMT2-227ENST00000557269 TAF6P49848 677 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 COPB1P53618 953 aaKnown RBP13.8□□□□□ -0.2
SHMT2-227ENST00000557269 MYL7Q01449 175 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 GPM6BQ13491 265 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 TRPC3Q13507 836 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 SPOPLQ6IQ16 392 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 FUT10Q6P4F1 479 aa13.8□□□□□ -0.2
SHMT2-227ENST00000557269 DDX53Q86TM3 631 aaKnown RBP13.8□□□□□ -0.2
SHMT2-227ENST00000557269 LRRC52Q8N7C0 313 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms