RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 SPTLC1O15269 473 aa20■□□□□ 0.79
VIPAS39-209ENST00000556909 MCM4P33991 863 aa20■□□□□ 0.79
VIPAS39-209ENST00000556909 PRPHP41219 470 aa20■□□□□ 0.79
VIPAS39-209ENST00000556909 CCR2P41597 374 aa20■□□□□ 0.79
VIPAS39-209ENST00000556909 CSTF1Q05048 431 aaKnown RBP20■□□□□ 0.79
VIPAS39-209ENST00000556909 NOLC1Q14978 699 aaKnown RBP eCLIP20■□□□□ 0.79
VIPAS39-209ENST00000556909 CTXN3Q4LDR2 81 aa20■□□□□ 0.79
VIPAS39-209ENST00000556909 FAM78AQ5JUQ0 283 aa20■□□□□ 0.79
VIPAS39-209ENST00000556909 TPGS2Q68CL5 300 aa20■□□□□ 0.79
VIPAS39-209ENST00000556909 ZNF280DQ6N043 979 aa20■□□□□ 0.79
VIPAS39-209ENST00000556909 ZNF852Q6ZMS4 543 aa20■□□□□ 0.79
VIPAS39-209ENST00000556909 DNASE1L2Q92874 299 aa20■□□□□ 0.79
VIPAS39-209ENST00000556909 TIPINQ9BVW5 301 aa20■□□□□ 0.79
VIPAS39-209ENST00000556909 TUBGCP4Q9UGJ1 667 aa20■□□□□ 0.79
VIPAS39-209ENST00000556909 PCDHGA2Q9Y5H1 932 aa20■□□□□ 0.79
VIPAS39-209ENST00000556909 SFI1A8K8P3 1242 aa19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 ZNF197O14709 1029 aa19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 MICAL2O94851 1124 aa19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 GUCY2CP25092 1073 aa19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 GRM2Q14416 872 aa19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 SLC10A6Q3KNW5 377 aa19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 SEZ6Q53EL9 994 aa19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 PDZD4Q76G19 769 aaPredicted RBP19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 SPIRE2Q8WWL2 714 aa19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 DDX12PQ92771 950 aa19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 TBC1D32Q96NH3 1257 aa19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 NELL2Q99435 816 aa19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 NTPCRQ9BSD7 190 aaKnown RBP19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 ZFP14Q9HCL3 533 aa19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 TSC2P49815 1807 aa19.99■□□□□ 0.79
VIPAS39-209ENST00000556909 TOM1L1O75674 476 aa19.98■□□□□ 0.79
VIPAS39-209ENST00000556909 RPS9P46781 194 aaKnown RBP19.98■□□□□ 0.79
VIPAS39-209ENST00000556909 ADCY1Q08828 1119 aa19.98■□□□□ 0.79
VIPAS39-209ENST00000556909 RAD51AP2Q09MP3 1159 aa19.98■□□□□ 0.79
VIPAS39-209ENST00000556909 STRN3Q13033 797 aa19.98■□□□□ 0.79
VIPAS39-209ENST00000556909 FZD5Q13467 585 aa19.98■□□□□ 0.79
VIPAS39-209ENST00000556909 DTHD1Q6ZMT9 781 aa19.98■□□□□ 0.79
VIPAS39-209ENST00000556909 TMEM161BQ8NDZ6 487 aa19.98■□□□□ 0.79
VIPAS39-209ENST00000556909 ASB16Q96NS5 453 aa19.98■□□□□ 0.79
VIPAS39-209ENST00000556909 PRMT8Q9NR22 394 aaPredicted RBP19.98■□□□□ 0.79
VIPAS39-209ENST00000556909 AFF4Q9UHB7 1163 aaKnown RBP19.98■□□□□ 0.79
VIPAS39-209ENST00000556909 PCDHB8Q9UN66 801 aa19.98■□□□□ 0.79
VIPAS39-209ENST00000556909 MRPS17Q9Y2R5 130 aaKnown RBP19.98■□□□□ 0.79
VIPAS39-209ENST00000556909 NUP210Q8TEM1 1887 aaPredicted RBP19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 NCOR2Q9Y618 2525 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 NCAM2O15394 837 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 MAPTP10636 758 aaKnown RBP19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 PLS3P13797 630 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 TWF1Q12792 350 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 ZRSR1Q15695 479 aaKnown RBP19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 DGLUCYQ7Z3D6 616 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 HS6ST3Q8IZP7 471 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 ELMOD1Q8N336 334 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 TMEM130Q8N3G9 435 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 ZBTB44Q8NCP5 570 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 APPL2Q8NEU8 664 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 NELL1Q92832 810 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 BORCS6Q96GS4 357 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 ZSWIM3Q96MP5 696 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 KIF2CQ99661 725 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 BRD9Q9H8M2 597 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 ZSCAN32Q9NX65 697 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 CEP72Q9P209 647 aa19.97■□□□□ 0.79
VIPAS39-209ENST00000556909 MED19A0JLT2 244 aaPredicted RBP19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 MOSPD3O75425 235 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 CXCL8P10145 99 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 CPB1P15086 417 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 EPHA5P54756 1037 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 MCL1Q07820 350 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 PUM1Q14671 1186 aaKnown RBP eCLIP19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 HYIQ5T013 277 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 CYP4A22Q5TCH4 519 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 IQCEQ6IPM2 695 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 TSSK4Q6SA08 328 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 VITQ6UXI7 678 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 ZPBP2Q6X784 338 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 ZNF687Q8N1G0 1237 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 ATRIPQ8WXE1 791 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 SMARCD2Q92925 531 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 PNMA5Q96PV4 448 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 TRMT61BQ9BVS5 477 aaKnown RBP19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 NCDNQ9UBB6 729 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 MAFFQ9ULX9 164 aa19.96■□□□□ 0.79
VIPAS39-209ENST00000556909 LILRB5O75023 590 aa19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 SMTNP53814 917 aa19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 SPAG1Q07617 926 aa19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 MTAPQ13126 283 aa19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 RNF19BQ6ZMZ0 732 aa19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 SYT2Q8N9I0 419 aaPredicted RBP19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 ZNF512Q96ME7 567 aaPredicted RBP19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 HAPLN2Q9GZV7 340 aa19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 EPC1Q9H2F5 836 aa19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 ASAH2Q9NR71 780 aa19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 DLL3Q9NYJ7 618 aa19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 KCNG1Q9UIX4 513 aa19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 NDRG2Q9UN36 371 aaKnown RBP19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 SMG5Q9UPR3 1016 aaKnown RBP19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 YIPF1Q9Y548 306 aa19.95■□□□□ 0.78
VIPAS39-209ENST00000556909 NCANO14594 1321 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms