RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 MARS2Q96GW9 593 aaKnown RBP5.16□□□□□ -1.58
SCFD1-216ENST00000555550 UROC1Q96N76 676 aa5.16□□□□□ -1.58
SCFD1-216ENST00000555550 SLC2A13Q96QE2 648 aa5.16□□□□□ -1.58
SCFD1-216ENST00000555550 LDAHQ9H6V9 325 aa5.16□□□□□ -1.58
SCFD1-216ENST00000555550 TMEM140Q9NV12 185 aa5.16□□□□□ -1.58
SCFD1-216ENST00000555550 MOCS1Q9NZB8 636 aa5.16□□□□□ -1.58
SCFD1-216ENST00000555550 SCOCQ9UIL1 159 aa5.16□□□□□ -1.58
SCFD1-216ENST00000555550 KCNE5Q9UJ90 142 aa5.16□□□□□ -1.58
SCFD1-216ENST00000555550 ATP8A1Q9Y2Q0 1164 aa5.16□□□□□ -1.58
SCFD1-216ENST00000555550 GPR45Q9Y5Y3 372 aa5.16□□□□□ -1.58
SCFD1-216ENST00000555550 PEX1O43933 1283 aa5.15□□□□□ -1.59
SCFD1-216ENST00000555550 ERN1O75460 977 aaKnown RBP5.15□□□□□ -1.59
SCFD1-216ENST00000555550 POU3F3P20264 500 aaPredicted RBP5.15□□□□□ -1.59
SCFD1-216ENST00000555550 MCAMP43121 646 aa5.15□□□□□ -1.59
SCFD1-216ENST00000555550 MTNR1BP49286 362 aa5.15□□□□□ -1.59
SCFD1-216ENST00000555550 SP140Q13342 867 aa5.15□□□□□ -1.59
SCFD1-216ENST00000555550 SRSF7Q16629 238 aaKnown RBP eCLIP5.15□□□□□ -1.59
SCFD1-216ENST00000555550 DRC7Q8IY82 874 aa5.15□□□□□ -1.59
SCFD1-216ENST00000555550 LNX2Q8N448 690 aa5.15□□□□□ -1.59
SCFD1-216ENST00000555550 PPM1NQ8N819 430 aa5.15□□□□□ -1.59
SCFD1-216ENST00000555550 SSH3Q8TE77 659 aa5.15□□□□□ -1.59
SCFD1-216ENST00000555550 MYOCQ99972 504 aa5.15□□□□□ -1.59
SCFD1-216ENST00000555550 PUS7LQ9H0K6 701 aaKnown RBP5.15□□□□□ -1.59
SCFD1-216ENST00000555550 FBXO34Q9NWN3 711 aa5.15□□□□□ -1.59
SCFD1-216ENST00000555550 AJAP1Q9UKB5 411 aaPredicted RBP5.15□□□□□ -1.59
SCFD1-216ENST00000555550 PHLDB1Q86UU1 1377 aa5.15□□□□□ -1.59
SCFD1-216ENST00000555550 FAM171A2A8MVW0 826 aa5.14□□□□□ -1.59
SCFD1-216ENST00000555550 CELA2AP08217 269 aa5.14□□□□□ -1.59
SCFD1-216ENST00000555550 ATP5JP18859 108 aa5.14□□□□□ -1.59
SCFD1-216ENST00000555550 PPP3CAQ08209 521 aa5.14□□□□□ -1.59
SCFD1-216ENST00000555550 ACAP2Q15057 778 aa5.14□□□□□ -1.59
SCFD1-216ENST00000555550 SF3B3Q15393 1217 aaKnown RBP5.14□□□□□ -1.59
SCFD1-216ENST00000555550 GEN1Q17RS7 908 aa5.14□□□□□ -1.59
SCFD1-216ENST00000555550 NECAB2Q7Z6G3 386 aa5.14□□□□□ -1.59
SCFD1-216ENST00000555550 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.14□□□□□ -1.59
SCFD1-216ENST00000555550 CCHCR1Q8TD31 782 aa5.14□□□□□ -1.59
SCFD1-216ENST00000555550 ZBTB9Q96C00 473 aa5.14□□□□□ -1.59
SCFD1-216ENST00000555550 KRTAP1-5Q9BYS1 174 aa5.14□□□□□ -1.59
SCFD1-216ENST00000555550 MKS1Q9NXB0 559 aa5.14□□□□□ -1.59
SCFD1-216ENST00000555550 SBNO2Q9Y2G9 1366 aa5.14□□□□□ -1.59
SCFD1-216ENST00000555550 K7ESF4 209 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 MT-CO1P00395 513 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 CKBP12277 381 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 AGXTP21549 392 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 IARSP41252 1262 aaKnown RBP5.13□□□□□ -1.59
SCFD1-216ENST00000555550 FOLR3P41439 243 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 KRTAP10-7P60409 375 aaPredicted RBP5.13□□□□□ -1.59
SCFD1-216ENST00000555550 ITKQ08881 620 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 MGAT2Q10469 447 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 TSTD2Q5T7W7 516 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 ZNF529Q6P280 563 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 UBE3BQ7Z3V4 1068 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 COLGALT2Q8IYK4 626 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 PDPRQ8NCN5 879 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 TIMP4Q99727 224 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 C7orf25Q9BPX7 421 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 MANSC1Q9H8J5 431 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 HSFX1Q9UBD0 423 aa5.13□□□□□ -1.59
SCFD1-216ENST00000555550 SAP30BPQ9UHR5 308 aaKnown RBP5.13□□□□□ -1.59
SCFD1-216ENST00000555550 RUVBL1Q9Y265 456 aaKnown RBP5.13□□□□□ -1.59
SCFD1-216ENST00000555550 YY2O15391 372 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 TEX33O43247 280 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 GPR32O75388 356 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 ELFN1P0C7U0 828 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 MYBL2P10244 700 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 FPR1P21462 350 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 GPD1P21695 349 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 ALDH1A3P47895 512 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 GUCY2FP51841 1108 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 FAM50AQ14320 339 aaKnown RBP5.12□□□□□ -1.59
SCFD1-216ENST00000555550 KAZNQ674X7 775 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.12□□□□□ -1.59
SCFD1-216ENST00000555550 GRASPQ7Z6J2 395 aaPredicted RBP5.12□□□□□ -1.59
SCFD1-216ENST00000555550 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.12□□□□□ -1.59
SCFD1-216ENST00000555550 NRG4Q8WWG1 115 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 TFAP2BQ92481 460 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 DPF2Q92785 391 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 HOXB13Q92826 284 aaPredicted RBP5.12□□□□□ -1.59
SCFD1-216ENST00000555550 MTMR8Q96EF0 704 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 CYFIP2Q96F07 1278 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 SLC23A1Q9UHI7 598 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 INTUQ9ULD6 942 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 ENTPD2Q9Y5L3 495 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 ACTL7AQ9Y615 435 aa5.12□□□□□ -1.59
SCFD1-216ENST00000555550 TRGV11A0A075B6L2 103 aa5.11□□□□□ -1.59
SCFD1-216ENST00000555550 XPOTO43592 962 aaKnown RBP5.11□□□□□ -1.59
SCFD1-216ENST00000555550 CDK11BP21127 795 aaKnown RBP5.11□□□□□ -1.59
SCFD1-216ENST00000555550 GUCY1A2P33402 732 aa5.11□□□□□ -1.59
SCFD1-216ENST00000555550 MAPK10P53779 464 aa5.11□□□□□ -1.59
SCFD1-216ENST00000555550 NOMO3P69849 1222 aa5.11□□□□□ -1.59
SCFD1-216ENST00000555550 CREMQ03060 361 aa5.11□□□□□ -1.59
SCFD1-216ENST00000555550 SEPT2Q15019 361 aa5.11□□□□□ -1.59
SCFD1-216ENST00000555550 NOMO2Q5JPE7 1267 aa5.11□□□□□ -1.59
SCFD1-216ENST00000555550 TSHZ1Q6ZSZ6 1077 aa5.11□□□□□ -1.59
SCFD1-216ENST00000555550 MIGA2Q7L4E1 593 aa5.11□□□□□ -1.59
SCFD1-216ENST00000555550 PTF1AQ7RTS3 328 aa5.11□□□□□ -1.59
SCFD1-216ENST00000555550 AMIGO2Q86SJ2 522 aa5.11□□□□□ -1.59
SCFD1-216ENST00000555550 PEG10Q86TG7 708 aaKnown RBP5.11□□□□□ -1.59
SCFD1-216ENST00000555550 RHOT1Q8IXI2 618 aa5.11□□□□□ -1.59
SCFD1-216ENST00000555550 HASPINQ8TF76 798 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms