RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 ATP1A3P13637 1013 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 PRKCSHP14314 528 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-209ENST00000553949 IGFBP6P24592 240 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-209ENST00000553949 CTNNB1P35222 781 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 PPM1AP35813 382 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 FMO5P49326 533 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 MXI1P50539 228 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 ERVK-21P61565 698 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 TPM4P67936 248 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 KCNH2Q12809 1159 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 NCOA4Q13772 614 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 KRT31Q15323 416 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 MAN2A1Q16706 1144 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 CBWD6Q4V339 395 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 VWA3BQ502W6 1294 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 EPC2Q52LR7 807 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 CBWD3Q5JTY5 395 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 CBWD5Q5RIA9 395 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 CD300LGQ6UXG3 332 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 C3orf58Q8NDZ4 430 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 ANKRD20A12PQ8NF67 263 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 BCL7CQ8WUZ0 217 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-209ENST00000553949 IGSF21Q96ID5 467 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 SAMD11Q96NU1 681 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 PLVAPQ9BX97 442 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 TAB2Q9NYJ8 693 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 SPG21Q9NZD8 308 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 LIMA1Q9UHB6 759 aaKnown RBP13.2□□□□□ -0.3
SHMT2-209ENST00000553949 MTUS1Q9ULD2 1270 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 R3HCC1Q9Y3T6 440 aaKnown RBP13.2□□□□□ -0.3
SHMT2-209ENST00000553949 CITO14578 2027 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 C5orf67F2Z3F1 127 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 N4BP1O75113 896 aaKnown RBP13.19□□□□□ -0.3
SHMT2-209ENST00000553949 TADA2AO75478 443 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 VNN1O95497 513 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 CST3P01034 146 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-209ENST00000553949 RB1P06400 928 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 PNPLA4P41247 253 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 MYL7Q01449 175 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 TRPC3Q13507 836 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 MIIPQ5JXC2 388 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 GAS2L3Q86XJ1 694 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 LRRC52Q8N7C0 313 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 KLHL23Q8NBE8 558 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 TAS1R2Q8TE23 839 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 HASPINQ8TF76 798 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 ZNF560Q96MR9 790 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 CERS4Q9HA82 394 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 ADAM28Q9UKQ2 775 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 NUB1Q9Y5A7 615 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 ANK1P16157 1881 aa13.19□□□□□ -0.3
SHMT2-209ENST00000553949 LRRC10BA6NIK2 292 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 SOX1O00570 391 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-209ENST00000553949 SPTLC1O15269 473 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 PMM2O15305 246 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 P4HA2O15460 535 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 FGF18O76093 207 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 HLA-DRAP01903 254 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 TPM2P07951 284 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 PIK3CAP42336 1068 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 AARSP49588 968 aaKnown RBP eCLIP13.18□□□□□ -0.3
SHMT2-209ENST00000553949 TAF6P49848 677 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 LILRA4P59901 499 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 MYL6P60660 151 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 PLCB3Q01970 1234 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 MYO1EQ12965 1108 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 APTXQ7Z2E3 356 aaKnown RBP13.18□□□□□ -0.3
SHMT2-209ENST00000553949 FBXL13Q8NEE6 735 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 ARNTL2Q8WYA1 636 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 SEMA4DQ92854 862 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 TMEM169Q96HH4 297 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 HPDLQ96IR7 371 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 C11orf84Q9BUA3 381 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-209ENST00000553949 XYLT2Q9H1B5 865 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 RBSNQ9H1K0 784 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 VPS16Q9H269 839 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 NDST4Q9H3R1 872 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 RAB20Q9NX57 234 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 COQ4Q9Y3A0 265 aa13.18□□□□□ -0.3
SHMT2-209ENST00000553949 I3L4J1 428 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 TRAPPC3O43617 180 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 STAU1O95793 577 aaKnown RBP13.17□□□□□ -0.3
SHMT2-209ENST00000553949 EFEMP2O95967 443 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 PAX3P23760 479 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 ATICP31939 592 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 COPB1P53618 953 aaKnown RBP13.17□□□□□ -0.3
SHMT2-209ENST00000553949 KRT17Q04695 432 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 CETN1Q12798 172 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 SGSM1Q2NKQ1 1148 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 SV2CQ496J9 727 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 TIGD5Q53EQ6 642 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 FUT10Q6P4F1 479 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 DDX53Q86TM3 631 aaKnown RBP13.17□□□□□ -0.3
SHMT2-209ENST00000553949 FBXO22Q8NEZ5 403 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 VN1R3Q9BXE9 311 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 GPR62Q9BZJ7 368 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 ZNF576Q9H609 170 aa13.17□□□□□ -0.3
SHMT2-209ENST00000553949 SF3B1O75533 1304 aaKnown RBP eCLIP13.16□□□□□ -0.35e-8■■■■■ 37.4
SHMT2-209ENST00000553949 TDRD15B5MCY1 1934 aaKnown RBP13.16□□□□□ -0.3
SHMT2-209ENST00000553949 TMEM265A0A087WTH1 108 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms