RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 LRRC3BQ96PB8 259 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 HSD17B14Q9BPX1 270 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 TRPV4Q9HBA0 871 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 GJB4Q9NTQ9 266 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 SNX14Q9Y5W7 946 aa14.25□□□□□ -0.13
VPS29-211ENST00000553128 LOC400499M0QZD8 3231 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 SPECC1L-ADORA2AF8WAN1 911 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 N4BP3O15049 544 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 LYPLA2O95372 231 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 DEXIO95424 95 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 LIG1P18858 919 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 RBM25P49756 843 aaKnown RBP14.24□□□□□ -0.13
VPS29-211ENST00000553128 KPNA1P52294 538 aaPredicted RBP14.24□□□□□ -0.13
VPS29-211ENST00000553128 TWF1Q12792 350 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 PON2Q15165 354 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 FAM187BQ17R55 369 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 CYP4A22Q5TCH4 519 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 TRIM22Q8IYM9 498 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 SHKBP1Q8TBC3 707 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 CSGALNACT1Q8TDX6 532 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 ZFYVE19Q96K21 471 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 LARP6Q9BRS8 491 aaKnown RBP14.24□□□□□ -0.13
VPS29-211ENST00000553128 ANKEF1Q9NU02 776 aa14.24□□□□□ -0.13
VPS29-211ENST00000553128 POLR3BQ9NW08 1133 aaPredicted RBP14.24□□□□□ -0.13
VPS29-211ENST00000553128 PDCD11Q14690 1871 aaKnown RBP14.23□□□□□ -0.13
VPS29-211ENST00000553128 CCDC194A0A1B0GVG4 234 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 MYBPHLA2RUH7 354 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 MARCH6O60337 910 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 RPP40O75818 363 aaKnown RBP14.23□□□□□ -0.13
VPS29-211ENST00000553128 HOXA6P31267 233 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 CTHP32929 405 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 MLLT6P55198 1093 aaPredicted RBP14.23□□□□□ -0.13
VPS29-211ENST00000553128 EVCP57679 992 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 FOXC1Q12948 553 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 PRPF4BQ13523 1007 aaKnown RBP14.23□□□□□ -0.13
VPS29-211ENST00000553128 CCINQ13939 588 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 TMEM132AQ24JP5 1023 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 STXBP5Q5T5C0 1151 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 PIK3AP1Q6ZUJ8 805 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 GAB3Q8WWW8 586 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 LOXL4Q96JB6 756 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 CCDC113Q9H0I3 377 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 GTSE1Q9NYZ3 720 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 FBXL5Q9UKA1 691 aa14.23□□□□□ -0.13
VPS29-211ENST00000553128 DSPP15924 2871 aaKnown RBP14.23□□□□□ -0.13
VPS29-211ENST00000553128 FREM2Q5SZK8 3169 aa14.22□□□□□ -0.13
VPS29-211ENST00000553128 CHADO15335 359 aa14.22□□□□□ -0.13
VPS29-211ENST00000553128 TRAPPC3O43617 180 aa14.22□□□□□ -0.13
VPS29-211ENST00000553128 GCFC2P16383 781 aaKnown RBP14.22□□□□□ -0.13
VPS29-211ENST00000553128 MPLP40238 635 aa14.22□□□□□ -0.13
VPS29-211ENST00000553128 NOVA1P51513 510 aaKnown RBP14.22□□□□□ -0.13
VPS29-211ENST00000553128 EPHA5P54756 1037 aa14.22□□□□□ -0.13
VPS29-211ENST00000553128 FCHO2Q0JRZ9 810 aa14.22□□□□□ -0.13
VPS29-211ENST00000553128 TOB2Q14106 344 aaPredicted RBP14.22□□□□□ -0.13
VPS29-211ENST00000553128 MRPL58Q14197 206 aaKnown RBP14.22□□□□□ -0.13
VPS29-211ENST00000553128 DGKKQ5KSL6 1271 aa14.22□□□□□ -0.13
VPS29-211ENST00000553128 RNF43Q68DV7 783 aa14.22□□□□□ -0.13
VPS29-211ENST00000553128 GALNT17Q6IS24 598 aa14.22□□□□□ -0.13
VPS29-211ENST00000553128 CACNA2D4Q7Z3S7 1137 aa14.22□□□□□ -0.13
VPS29-211ENST00000553128 CEP120Q8N960 986 aa14.22□□□□□ -0.13
VPS29-211ENST00000553128 ZNF512Q96ME7 567 aaPredicted RBP14.22□□□□□ -0.13
VPS29-211ENST00000553128 KIFC3Q9BVG8 833 aa14.22□□□□□ -0.13
VPS29-211ENST00000553128 LRRC3Q9BY71 257 aa14.22□□□□□ -0.13
VPS29-211ENST00000553128 SLITRK6Q9H5Y7 841 aa14.22□□□□□ -0.13
VPS29-211ENST00000553128 C8orf33Q9H7E9 229 aaPredicted RBP14.22□□□□□ -0.13
VPS29-211ENST00000553128 SMIM28A0A1B0GU29 152 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 A0A1W2PRU2 124 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 SRRM3A6NNA2 597 aaPredicted RBP14.21□□□□□ -0.13
VPS29-211ENST00000553128 VNN2O95498 520 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 IRX6P78412 446 aaPredicted RBP14.21□□□□□ -0.13
VPS29-211ENST00000553128 TNK2Q07912 1038 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 ZNF252P-AS1Q0IIN9 211 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 MAPK8IP2Q13387 824 aaPredicted RBP14.21□□□□□ -0.13
VPS29-211ENST00000553128 IQCEQ6IPM2 695 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 RNF19BQ6ZMZ0 732 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 TMC8Q8IU68 726 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 ZBTB8OSQ8IWT0 167 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 YAF2Q8IY57 180 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 TMEM130Q8N3G9 435 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 MSANTD3Q96H12 275 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 CCDC43Q96MW1 224 aaKnown RBP14.21□□□□□ -0.13
VPS29-211ENST00000553128 ZMAT2Q96NC0 199 aaKnown RBP14.21□□□□□ -0.13
VPS29-211ENST00000553128 MKNK1Q9BUB5 465 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 POLD4Q9HCU8 107 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 ASAH2Q9NR71 780 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 PKD1L2Q7Z442 2459 aa14.21□□□□□ -0.13
VPS29-211ENST00000553128 C4orf47A7E2U8 309 aa14.2□□□□□ -0.14
VPS29-211ENST00000553128 ACKR2O00590 384 aa14.2□□□□□ -0.14
VPS29-211ENST00000553128 PODXLO00592 558 aa14.2□□□□□ -0.14
VPS29-211ENST00000553128 WNT7AO00755 349 aa14.2□□□□□ -0.14
VPS29-211ENST00000553128 CCDC192P0DO97 292 aa14.2□□□□□ -0.14
VPS29-211ENST00000553128 RING1Q06587 406 aa14.2□□□□□ -0.14
VPS29-211ENST00000553128 STK3Q13188 491 aa14.2□□□□□ -0.14
VPS29-211ENST00000553128 MAPK6Q16659 721 aa14.2□□□□□ -0.14
VPS29-211ENST00000553128 NT5DC1Q5TFE4 455 aa14.2□□□□□ -0.14
VPS29-211ENST00000553128 RALGPS2Q86X27 583 aaPredicted RBP14.2□□□□□ -0.14
VPS29-211ENST00000553128 SLFN12Q8IYM2 578 aa14.2□□□□□ -0.14
VPS29-211ENST00000553128 ELMOD1Q8N336 334 aa14.2□□□□□ -0.14
VPS29-211ENST00000553128 GATA6Q92908 595 aa14.2□□□□□ -0.14
VPS29-211ENST00000553128 UROC1Q96N76 676 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms