RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 IVNS1ABPQ9Y6Y0 642 aa5.96□□□□□ -1.46
LIMA1-215ENST00000552823 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-215ENST00000552823 MYO1CO00159 1063 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 DYNC1LI2O43237 492 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-215ENST00000552823 KRT1P04264 644 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 PDGFRBP09619 1106 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 CHKAP35790 457 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 ZNF699Q32M78 642 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 LIN9Q5TKA1 542 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 DENND2CQ68D51 928 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 DPY19L2Q6NUT2 758 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 CRELD2Q6UXH1 353 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-215ENST00000552823 ZNF365Q70YC5 407 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 CPLX4Q7Z7G2 160 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 SLC9A9Q8IVB4 645 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 MCOLN2Q8IZK6 566 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 OLIG1Q8TAK6 271 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 ACTRT1Q8TDG2 376 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 ZNF606Q8WXB4 792 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 HEXIM2Q96MH2 286 aaKnown RBP5.95□□□□□ -1.46
LIMA1-215ENST00000552823 CALN1Q9BXU9 219 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 MIS12Q9H081 205 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 CXCL16Q9H2A7 254 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 RNF14Q9UBS8 474 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 AGTPBP1Q9UPW5 1226 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 DOCK5Q9H7D0 1870 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 GOLGA8KD6RF30 607 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 RGS16O15492 202 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-215ENST00000552823 ITGB3P05106 788 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 COILP38432 576 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-215ENST00000552823 GCLCP48506 637 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-215ENST00000552823 MAP3K10Q02779 954 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 ZNF844Q08AG5 666 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 ALCAMQ13740 583 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 RAB6CQ53S08 254 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 NIPA1Q7RTP0 329 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 ANKMY2Q8IV38 441 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 IQCKQ8N0W5 287 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 GPC2Q8N158 579 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 GLIS1Q8NBF1 620 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 TFAP2BQ92481 460 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 ATP6V1G3Q96LB4 118 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 RAB6CQ9H0N0 254 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 SETD4Q9NVD3 440 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 RASAL2Q9UJF2 1139 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 AGAP1Q9UPQ3 857 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 MYPNQ86TC9 1320 aa5.95□□□□□ -1.46
LIMA1-215ENST00000552823 WDR91A4D1P6 747 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 CCDC188H7C350 402 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ECEL1O95672 775 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 C4BPAP04003 597 aaKnown RBP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 NFICP08651 508 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 YBX3P16989 372 aaKnown RBP eCLIP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 PHKA2P46019 1235 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 PMS2P54278 862 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 NEDD9Q14511 834 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 TAF5Q15542 800 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 CLEC16AQ2KHT3 1053 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 GLE1Q53GS7 698 aaKnown RBP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 FAXCQ5TGI0 409 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ATF7IP2Q5U623 682 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 DNAJC24Q6P3W2 148 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ANKS1BQ7Z6G8 1248 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ERICH1Q86X53 443 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 SAMD3Q8N6K7 520 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 C12orf29Q8N999 325 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 WHAMMQ8TF30 809 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 MFSD14AQ96MC6 490 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 KLF6Q99612 283 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 RAB17Q9H0T7 212 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 CISHQ9NSE2 258 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ARHGAP28Q9P2N2 729 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 MTRF1LQ9UGC7 380 aaKnown RBP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 HMGXB4Q9UGU5 601 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 CPA4Q9UI42 421 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ADCY3O60266 1144 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 SPAG7O75391 227 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 EPHX2P34913 555 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 PSMC1P62191 440 aaKnown RBP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ZACNQ401N2 412 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ALS2CLQ60I27 953 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 OR6B2Q6IFH4 312 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 DENND1BQ6P3S1 775 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 MFSD7Q6UXD7 560 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ZC3H18Q86VM9 953 aaKnown RBP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 KIAA0319LQ8IZA0 1049 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 MRPL4Q9BYD3 311 aaKnown RBP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 CARD9Q9H257 536 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 SMYD3Q9H7B4 428 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 VIPAS39Q9H9C1 493 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 RPF1Q9H9Y2 349 aaKnown RBP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 SPON1Q9HCB6 807 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ALG13Q9NP73 1137 aaKnown RBP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 PCDHB2Q9Y5E7 798 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 NR2E3Q9Y5X4 410 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 EVPLQ92817 2033 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 UBE4BO95155 1302 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 SGK1O00141 431 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 GPR25O00155 361 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 KIAA0391O15091 583 aaKnown RBP5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms