RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 LNX1Q8TBB1 728 aaPredicted RBP8.39□□□□□ -1.07
NEK3-201ENST00000550331 HASPINQ8TF76 798 aa8.39□□□□□ -1.07
NEK3-201ENST00000550331 KIFAP3Q92845 792 aa8.39□□□□□ -1.07
NEK3-201ENST00000550331 C8orf76Q96K31 380 aa8.39□□□□□ -1.07
NEK3-201ENST00000550331 IFT74Q96LB3 600 aa8.39□□□□□ -1.07
NEK3-201ENST00000550331 CLSTN3Q9BQT9 956 aa8.39□□□□□ -1.07
NEK3-201ENST00000550331 SLC2A4RGQ9NR83 387 aa8.39□□□□□ -1.07
NEK3-201ENST00000550331 PPP4R2Q9NY27 417 aa8.39□□□□□ -1.07
NEK3-201ENST00000550331 SNTG2Q9NY99 539 aa8.39□□□□□ -1.07
NEK3-201ENST00000550331 CDH7Q9ULB5 785 aa8.39□□□□□ -1.07
NEK3-201ENST00000550331 CA14Q9ULX7 337 aa8.39□□□□□ -1.07
NEK3-201ENST00000550331 LIMCH1Q9UPQ0 1083 aa8.39□□□□□ -1.07
NEK3-201ENST00000550331 NUMBLQ9Y6R0 609 aa8.39□□□□□ -1.07
NEK3-201ENST00000550331 CHD8Q9HCK8 2581 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 KRBA1A5PL33 1030 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 XYLBO75191 536 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 EDN1P05305 212 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 C8AP07357 584 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 SP9P0CG40 484 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 FSHRP23945 695 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 RAB33AQ14088 237 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 ZNF174Q15697 407 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 SPECC1Q5M775 1068 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 PPM1LQ5SGD2 360 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 ATF7IP2Q5U623 682 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 ERICH6BQ5W0A0 696 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 MTSS1LQ765P7 747 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 GRASPQ7Z6J2 395 aaPredicted RBP8.38□□□□□ -1.07
NEK3-201ENST00000550331 CEP57Q86XR8 500 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 NOSTRINQ8IVI9 506 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 RDH13Q8NBN7 331 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 UROC1Q96N76 676 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 BHMT2Q9H2M3 363 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 TBC1D17Q9HA65 648 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 ARHGEF3Q9NR81 526 aa8.38□□□□□ -1.07
NEK3-201ENST00000550331 NOL7Q9UMY1 257 aaKnown RBP8.38□□□□□ -1.07
NEK3-201ENST00000550331 SOBPA7XYQ1 873 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 LAD1O00515 517 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 TRAPPC3O43617 180 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 DXOO77932 396 aaKnown RBP8.37□□□□□ -1.07
NEK3-201ENST00000550331 B3GAT3O94766 335 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 DCNP07585 359 aaKnown RBP8.37□□□□□ -1.07
NEK3-201ENST00000550331 LIG1P18858 919 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 FGFR3P22607 806 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 CCT6AP40227 531 aaKnown RBP8.37□□□□□ -1.07
NEK3-201ENST00000550331 GRM5P41594 1212 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 CLCNKBP51801 687 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 GNL2Q13823 731 aaKnown RBP8.37□□□□□ -1.07
NEK3-201ENST00000550331 PDIA5Q14554 519 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 UPP1Q16831 310 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 UVSSAQ2YD98 709 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 NT5DC1Q5TFE4 455 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 EEF1DP3Q658K8 133 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 DCLRE1AQ6PJP8 1040 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 ANKS3Q6ZW76 656 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 CCDC83Q8IWF9 413 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 C4orf32Q8N8J7 132 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 IGSF22Q8N9C0 903 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 SLC7A14Q8TBB6 771 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 GPR152Q8TDT2 470 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 FGF13Q92913 245 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 DRC1Q96MC2 740 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 PPP1R10Q96QC0 940 aaKnown RBP8.37□□□□□ -1.07
NEK3-201ENST00000550331 KIFC3Q9BVG8 833 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 RAB34Q9BZG1 259 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 CXCL16Q9H2A7 254 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 SH2B1Q9NRF2 756 aaPredicted RBP8.37□□□□□ -1.07
NEK3-201ENST00000550331 TOPORSQ9NS56 1045 aaPredicted RBP8.37□□□□□ -1.07
NEK3-201ENST00000550331 MTRRQ9UBK8 725 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 LRWD1Q9UFC0 647 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 KCNH3Q9ULD8 1083 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 TNFSF13BQ9Y275 285 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 GDAQ9Y2T3 454 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 SIT1Q9Y3P8 196 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 BACE2Q9Y5Z0 518 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 CHD6Q8TD26 2715 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 MYH15Q9Y2K3 1946 aa8.37□□□□□ -1.07
NEK3-201ENST00000550331 MTCL1Q9Y4B5 1905 aaKnown RBP8.37□□□□□ -1.07
NEK3-201ENST00000550331 PATJQ8NI35 1801 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 K7ERI5 159 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 MSTNO14793 375 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 ADAM12O43184 909 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 KINO60870 393 aaKnown RBP8.36□□□□□ -1.07
NEK3-201ENST00000550331 SDHBP21912 280 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 U2AF2P26368 475 aaKnown RBP eCLIP8.36□□□□□ -1.077e-7■■□□□ 12.2
NEK3-201ENST00000550331 OR1D2P34982 312 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 NPTX2P47972 431 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 YARSP54577 528 aaKnown RBP8.36□□□□□ -1.07
NEK3-201ENST00000550331 STARD6P59095 220 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 ECM1Q16610 540 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 ST3GAL2Q16842 350 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 XKR4Q5GH76 650 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 GLRA4Q5JXX5 417 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 AXDND1Q5T1B0 1012 aaPredicted RBP8.36□□□□□ -1.07
NEK3-201ENST00000550331 ZNF385CQ66K41 422 aaPredicted RBP8.36□□□□□ -1.07
NEK3-201ENST00000550331 PARM1Q6UWI2 310 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 SVOPQ8N4V2 548 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 FAM184AQ8NB25 1140 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 SUMF1Q8NBK3 374 aa8.36□□□□□ -1.07
NEK3-201ENST00000550331 SNX29Q8TEQ0 813 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms