RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CALCAP01258 141 aa17.21■□□□□ 0.34
CUX1-213ENST00000549414 RFC5P40937 340 aa17.21■□□□□ 0.34
CUX1-213ENST00000549414 ACAD10Q6JQN1 1059 aa17.21■□□□□ 0.34
CUX1-213ENST00000549414 TEX2Q8IWB9 1127 aa17.21■□□□□ 0.34
CUX1-213ENST00000549414 SCFD2Q8WU76 684 aa17.21■□□□□ 0.34
CUX1-213ENST00000549414 FAM84AQ96KN4 292 aa17.21■□□□□ 0.34
CUX1-213ENST00000549414 FRMD3A2A2Y4 597 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 LSP1P33241 339 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 LMNTD2Q8IXW0 634 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 FBXO25Q8TCJ0 367 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 TGS1Q96RS0 853 aaKnown RBP17.2■□□□□ 0.34
CUX1-213ENST00000549414 KRT10P13645 584 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 PRLRP16471 622 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 MAGEA9P43362 315 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 NLRP11P59045 1033 aaKnown RBP17.2■□□□□ 0.34
CUX1-213ENST00000549414 DLG4P78352 724 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 ROR1Q01973 937 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 PRPSAP1Q14558 356 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 GLRA4Q5JXX5 417 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 IER5Q5VY09 327 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 MAP1SQ66K74 1059 aaPredicted RBP17.2■□□□□ 0.34
CUX1-213ENST00000549414 KCNV1Q6PIU1 500 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 C1orf186Q6ZWK4 172 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 COPEO14579 308 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 KRT37O76014 449 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 ITGB3P05106 788 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 CHN1P15882 459 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 BYSLQ13895 437 aaKnown RBP17.2■□□□□ 0.34
CUX1-213ENST00000549414 C4orf33Q8N1A6 199 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 RDM1Q8NG50 284 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 RAET1EQ8TD07 263 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 ATP8B4Q8TF62 1192 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 RNF139Q8WU17 664 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 PRMT1Q99873 361 aaKnown RBP17.2■□□□□ 0.34
CUX1-213ENST00000549414 C17orf75Q9HAS0 396 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 FRMPD4Q14CM0 1322 aa17.2■□□□□ 0.34
CUX1-213ENST00000549414 SPDYE16A6NNV3 312 aaPredicted RBP17.19■□□□□ 0.34
CUX1-213ENST00000549414 ZBTB22O15209 634 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 ITGA8P53708 1063 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 TMPRSS15P98073 1019 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 HIF1AQ16665 826 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 MUM1Q2TAK8 710 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 SLC13A1Q9BZW2 595 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 CST8O60676 142 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 COILP38432 576 aaPredicted RBP17.19■□□□□ 0.34
CUX1-213ENST00000549414 CREG2Q8IUH2 290 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 ANKRD13AQ8IZ07 590 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 TRAIPQ9BWF2 469 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 SIK2Q9H0K1 926 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 REXO2Q9Y3B8 237 aaKnown RBP17.19■□□□□ 0.34
CUX1-213ENST00000549414 ZBBXA8MT70 800 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 PSMD10O75832 226 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 GSTA1P08263 222 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 GSTA2P09210 222 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 SPATA31C1P0DKV0 1188 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 CYP24A1Q07973 514 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 MAPK7Q13164 816 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 KCNT1Q5JUK3 1230 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 HVCN1Q96D96 273 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 ZBTB45Q96K62 511 aaPredicted RBP17.19■□□□□ 0.34
CUX1-213ENST00000549414 AFG3L2Q9Y4W6 797 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 CCDC195A0A1B0GUA6 201 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 TCP11X1B4DZS4 312 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 AMHR2Q16671 573 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 AFAP1L2Q8N4X5 818 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 RUBCNQ92622 972 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 MED15Q96RN5 788 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 KLF6Q99612 283 aaPredicted RBP17.19■□□□□ 0.34
CUX1-213ENST00000549414 DDX56Q9NY93 547 aaKnown RBP17.19■□□□□ 0.34
CUX1-213ENST00000549414 ERAP1Q9NZ08 941 aa17.19■□□□□ 0.34
CUX1-213ENST00000549414 KCPQ6ZWJ8 1503 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 ITGB5P18084 799 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 MAP2K2P36507 400 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 FEZF2Q8TBJ5 459 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 ARHGEF26Q96DR7 871 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 BNIP3LO60238 219 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 APRTP07741 180 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 FAM153BP0C7A2 387 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 RBP5P82980 135 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 PPP3CAQ08209 521 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 LY6KQ17RY6 165 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 FAM153CQ494X1 144 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 HEATR6Q6AI08 1181 aaKnown RBP17.18■□□□□ 0.34
CUX1-213ENST00000549414 ETNPPLQ8TBG4 499 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 TRAPPC12Q8WVT3 735 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 FAM153AQ9UHL3 310 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 TOPAZ1Q8N9V7 1692 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 CHD2O14647 1828 aaKnown RBP17.18■□□□□ 0.34
CUX1-213ENST00000549414 ANKRD63C9JTQ0 380 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 GH1P01241 217 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 PBX1P40424 430 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 AP1B1Q10567 949 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 SNAPC2Q13487 334 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 ARSHQ5FYA8 562 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 RCOR2Q8IZ40 523 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 NEU2Q9Y3R4 380 aa17.18■□□□□ 0.34
CUX1-213ENST00000549414 KCNN4O15554 427 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 KITP10721 976 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 MUTP22033 750 aa17.17■□□□□ 0.34
CUX1-213ENST00000549414 RPS6KA2Q15349 733 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms