RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ZNF280AP59817 542 aaPredicted RBP5.17□□□□□ -1.58
VPS29-205ENST00000548539 RAB1AP62820 205 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 FAM193AP78312 1265 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 RIN1Q13671 783 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 PRAMEF14Q5SWL7 426 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 THEMIS2Q5TEJ8 643 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 RNF220Q5VTB9 566 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 DARS2Q6PI48 645 aaKnown RBP5.17□□□□□ -1.58
VPS29-205ENST00000548539 GADL1Q6ZQY3 521 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 Q6ZRM9 215 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 HEATR3Q7Z4Q2 680 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 VRK3Q8IV63 474 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 TRMT2AQ8IZ69 625 aaKnown RBP5.17□□□□□ -1.58
VPS29-205ENST00000548539 C3orf20Q8ND61 904 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 NTN5Q8WTR8 489 aaPredicted RBP5.17□□□□□ -1.58
VPS29-205ENST00000548539 MIEF2Q96C03 454 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 MRGPRX4Q96LA9 322 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 BCO1Q9HAY6 547 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 LMBRD1Q9NUN5 540 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 ABCF2Q9UG63 623 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 L1RE1Q9UN81 338 aa5.17□□□□□ -1.58
VPS29-205ENST00000548539 A0A1W2PRX2 142 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 ANO9A1A5B4 782 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 ZAR1LA6NP61 321 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 SLC16A6O15403 523 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 GPR32O75388 356 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 VSIG10L2P0DP72 767 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 GYPEP15421 78 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 DDCP20711 480 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 PEX2P28328 305 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 PCSK1P29120 753 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 ADCY7P51828 1080 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 AGFG1P52594 562 aaKnown RBP5.16□□□□□ -1.58
VPS29-205ENST00000548539 HK3P52790 923 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 WNT3AP56704 352 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 TOB2Q14106 344 aaPredicted RBP5.16□□□□□ -1.58
VPS29-205ENST00000548539 FAM43AQ8N2R8 423 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 SAMD3Q8N6K7 520 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 OR5M3Q8NGP4 307 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 IFI44Q8TCB0 444 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 SLC25A43Q8WUT9 341 aaPredicted RBP5.16□□□□□ -1.58
VPS29-205ENST00000548539 SLC35A4Q96G79 324 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 CDK5RAP3Q96JB5 506 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 CDC5LQ99459 802 aaKnown RBP5.16□□□□□ -1.58
VPS29-205ENST00000548539 NAA15Q9BXJ9 866 aaKnown RBP5.16□□□□□ -1.58
VPS29-205ENST00000548539 ZMAT3Q9HA38 289 aaKnown RBP5.16□□□□□ -1.58
VPS29-205ENST00000548539 TMEM140Q9NV12 185 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 PHTF1Q9UMS5 762 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 POLHQ9Y253 713 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 ACTL7AQ9Y615 435 aa5.16□□□□□ -1.58
VPS29-205ENST00000548539 GOLIM4O00461 696 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 LDHAP00338 332 aaKnown RBP5.15□□□□□ -1.59
VPS29-205ENST00000548539 HRGP04196 525 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 ERBB2P04626 1255 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 SLC5A1P13866 664 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 MALP21145 153 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 CD38P28907 300 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 CRHR1P34998 444 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 KRTAP10-9P60411 292 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 NKX6-1P78426 367 aaPredicted RBP5.15□□□□□ -1.59
VPS29-205ENST00000548539 TLE1Q04724 770 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 SNAPC2Q13487 334 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 SEMA5AQ13591 1074 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 PLS1Q14651 629 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 LONRF1Q17RB8 773 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 GJC2Q5T442 439 aaPredicted RBP5.15□□□□□ -1.59
VPS29-205ENST00000548539 MAEAQ7L5Y9 396 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 BHLHA9Q7RTU4 235 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 SYNE4Q8N205 404 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 CELF5Q8N6W0 485 aaKnown RBP5.15□□□□□ -1.59
VPS29-205ENST00000548539 LRTOMTQ8WZ04 291 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 RABGGTAQ92696 567 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 LPPQ93052 612 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 GPHA2Q96T91 129 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 ZNF700Q9H0M5 742 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 SLC6A15Q9H2J7 730 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 CPA4Q9UI42 421 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 RIPOR2Q9Y4F9 1068 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 COMMD10Q9Y6G5 202 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 ZMYM3Q14202 1370 aa5.15□□□□□ -1.59
VPS29-205ENST00000548539 FAM20BO75063 409 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 JUNP05412 331 aaKnown RBP5.14□□□□□ -1.59
VPS29-205ENST00000548539 RAP2AP10114 183 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 TYRP14679 529 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 SMARCA1P28370 1054 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 SERPINB3P29508 390 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 GUCY1A2P33402 732 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 ALDH1A3P47895 512 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 CACNB3P54284 484 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 ADAM8P78325 824 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 ATP8B2P98198 1209 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 MTM1Q13496 603 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 SAFB2Q14151 953 aaKnown RBP eCLIP5.14□□□□□ -1.59
VPS29-205ENST00000548539 FGL2Q14314 439 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 RAB39AQ14964 217 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 STRIP1Q5VSL9 837 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.14□□□□□ -1.59
VPS29-205ENST00000548539 APOA5Q6Q788 366 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 SKAP1Q86WV1 359 aa5.14□□□□□ -1.59
VPS29-205ENST00000548539 ADGRG3Q86Y34 549 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms