RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SLC38A10Q9HBR0 1119 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 NOD2Q9HC29 1040 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.99■□□□□ 0.15
USP28-214ENST00000545540 IGF2BP3O00425 579 aaKnown RBP eCLIP15.99■□□□□ 0.15
USP28-214ENST00000545540 HSPA6P17066 643 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 HIRAP54198 1017 aaPredicted RBP15.99■□□□□ 0.15
USP28-214ENST00000545540 PRKCEQ02156 737 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 CXCL9Q07325 125 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 DRP2Q13474 957 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 CYP1B1Q16678 543 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 SNRNP48Q6IEG0 339 aaKnown RBP15.99■□□□□ 0.15
USP28-214ENST00000545540 STYK1Q6J9G0 422 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 CCDC91Q7Z6B0 441 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 FITM2Q8N6M3 262 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 LRRN4Q8WUT4 740 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 RBM15Q96T37 977 aaKnown RBP eCLIP15.99■□□□□ 0.15
USP28-214ENST00000545540 MOV10L1Q9BXT6 1211 aaKnown RBP15.99■□□□□ 0.15
USP28-214ENST00000545540 CNOT7Q9UIV1 285 aaKnown RBP15.99■□□□□ 0.15
USP28-214ENST00000545540 EXOC7Q9UPT5 735 aa15.99■□□□□ 0.15
USP28-214ENST00000545540 ATXN2Q99700 1313 aaKnown RBP15.98■□□□□ 0.15
USP28-214ENST00000545540 RASA4BC9J798 803 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 GOLGA8RI6L899 631 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 P4HA2O15460 535 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 RASA4O43374 803 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 GNA15P30679 374 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 WDR44Q5JSH3 913 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 HOMER3Q9NSC5 361 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 TJP2Q9UDY2 1190 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 FBXO40Q9UH90 709 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 NUB1Q9Y5A7 615 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 CST3P01034 146 aaPredicted RBP15.98■□□□□ 0.15
USP28-214ENST00000545540 FOXN2P32314 431 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 HMGCS2P54868 508 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 SP2Q02086 613 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 EN1Q05925 392 aaPredicted RBP15.98■□□□□ 0.15
USP28-214ENST00000545540 SWT1Q5T5J6 900 aaKnown RBP15.98■□□□□ 0.15
USP28-214ENST00000545540 DPH6Q7L8W6 267 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 N4BP2L2Q92802 583 aaPredicted RBP15.98■□□□□ 0.15
USP28-214ENST00000545540 GMLQ99445 158 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 TCHPQ9BT92 498 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 KDM4CQ9H3R0 1056 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 QSER1Q2KHR3 1735 aa15.98■□□□□ 0.15
USP28-214ENST00000545540 PIK3R2O00459 728 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 VNN1O95497 513 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 ATP6V1G2O95670 118 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 GAS8O95995 478 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 WEE2P0C1S8 567 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 TNFSF9P41273 254 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 NBPF12Q5TAG4 269 aaPredicted RBP15.97■□□□□ 0.15
USP28-214ENST00000545540 MCF2L2Q86YR7 1114 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 TMEM121Q9BTD3 319 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 FKBP1AP62942 108 aaKnown RBP15.97■□□□□ 0.15
USP28-214ENST00000545540 MGAT5Q09328 741 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 MYO1EQ12965 1108 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 TMEM63BQ5T3F8 832 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 MIS18BP1Q6P0N0 1132 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 MFSD7Q6UXD7 560 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 KCNV2Q8TDN2 545 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 MFSD14AQ96MC6 490 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 TMEM237Q96Q45 408 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 NCAPGQ9BPX3 1015 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 VPS37BQ9H9H4 285 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 IVNS1ABPQ9Y6Y0 642 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 KAT6AQ92794 2004 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 KRT16P08779 473 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 BRD2P25440 801 aaKnown RBP15.97■□□□□ 0.15
USP28-214ENST00000545540 MAMLD1Q13495 774 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 MYBPC2Q14324 1141 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 RHBDF2Q6PJF5 856 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 FMNL3Q8IVF7 1028 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 ATL2Q8NHH9 583 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 CENPTQ96BT3 561 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 MCEEQ96PE7 176 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 USP15Q9Y4E8 981 aaPredicted RBP15.97■□□□□ 0.15
USP28-214ENST00000545540 KIF13BQ9NQT8 1826 aa15.97■□□□□ 0.15
USP28-214ENST00000545540 UPP2O95045 317 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 ALDH5A1P51649 535 aaPredicted RBP15.96■□□□□ 0.15
USP28-214ENST00000545540 POLGP54098 1239 aaPredicted RBP15.96■□□□□ 0.15
USP28-214ENST00000545540 GPS1Q13098 491 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 XRCC4Q13426 336 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 CGB2Q6NT52 195 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 C12orf56Q8IXR9 622 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 GIMAP7Q8NHV1 300 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 PPP1R16BQ96T49 567 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 GGA2Q9UJY4 613 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 AGO2Q9UKV8 859 aaKnown RBP15.96■□□□□ 0.15
USP28-214ENST00000545540 ASAP2O43150 1006 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 CSDE1O75534 798 aaKnown RBP15.96■□□□□ 0.15
USP28-214ENST00000545540 ITIH2P19823 946 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 MUTP22033 750 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 MARK3P27448 753 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 EFTUD2Q15029 972 aaKnown RBP eCLIP15.96■□□□□ 0.152e-6■■■■■ 27.7
USP28-214ENST00000545540 LACTB2Q53H82 288 aaPredicted RBP15.96■□□□□ 0.15
USP28-214ENST00000545540 ASAP3Q8TDY4 903 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 KLHL29Q96CT2 875 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 RUNDC3BQ96NL0 473 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 RBAKQ9NYW8 714 aaPredicted RBP15.96■□□□□ 0.15
USP28-214ENST00000545540 COQ4Q9Y3A0 265 aa15.96■□□□□ 0.15
USP28-214ENST00000545540 A0A1W2PPM1 405 aa15.96■□□□□ 0.14
USP28-214ENST00000545540 MTA2O94776 668 aa15.96■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms