RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 WEE2P0C1S8 567 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 PAX3P23760 479 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 OR1D2P34982 312 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 NDUFA8P51970 172 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 EHHADHQ08426 723 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 RAB33AQ14088 237 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 VARS2Q5ST30 1063 aaKnown RBP17.05■□□□□ 0.32
CCDC78-216ENST00000544996 LIN9Q5TKA1 542 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 CRELD2Q6UXH1 353 aaPredicted RBP17.05■□□□□ 0.32
CCDC78-216ENST00000544996 EPM2AIP1Q7L775 607 aaPredicted RBP17.05■□□□□ 0.32
CCDC78-216ENST00000544996 NT5DC4Q86YG4 428 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 GRAMD1CQ8IYS0 662 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 GLIS3Q8NEA6 775 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 CMASQ8NFW8 434 aaPredicted RBP17.05■□□□□ 0.32
CCDC78-216ENST00000544996 ZNF507Q8TCN5 953 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 NOC3LQ8WTT2 800 aaKnown RBP17.05■□□□□ 0.32
CCDC78-216ENST00000544996 CCDC34Q96HJ3 373 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 CBWD1Q9BRT8 395 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 PCIF1Q9H4Z3 704 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 CDH22Q9UJ99 828 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 CDY1Q9Y6F8 540 aa17.05■□□□□ 0.32
CCDC78-216ENST00000544996 CCDC195A0A1B0GUA6 201 aa17.04■□□□□ 0.32
CCDC78-216ENST00000544996 LOC730098B7Z3J9 87 aa17.04■□□□□ 0.32
CCDC78-216ENST00000544996 ALADP13716 330 aa17.04■□□□□ 0.32
CCDC78-216ENST00000544996 GUCY2FP51841 1108 aa17.04■□□□□ 0.32
CCDC78-216ENST00000544996 HS2ST1Q7LGA3 356 aa17.04■□□□□ 0.32
CCDC78-216ENST00000544996 GPD1LQ8N335 351 aa17.04■□□□□ 0.32
CCDC78-216ENST00000544996 C1QTNF1Q9BXJ1 281 aa17.04■□□□□ 0.32
CCDC78-216ENST00000544996 POMKQ9H5K3 350 aa17.04■□□□□ 0.32
CCDC78-216ENST00000544996 PIDD1Q9HB75 910 aa17.04■□□□□ 0.32
CCDC78-216ENST00000544996 SLC39A2Q9NP94 309 aa17.04■□□□□ 0.32
CCDC78-216ENST00000544996 TSHZ2Q9NRE2 1034 aa17.04■□□□□ 0.32
CCDC78-216ENST00000544996 EXOC1Q9NV70 894 aa17.04■□□□□ 0.32
CCDC78-216ENST00000544996 ZDHHC7Q9NXF8 308 aa17.04■□□□□ 0.32
CCDC78-216ENST00000544996 RBAKQ9NYW8 714 aaPredicted RBP17.04■□□□□ 0.32
CCDC78-216ENST00000544996 PCDHB8Q9UN66 801 aa17.04■□□□□ 0.32
CCDC78-216ENST00000544996 GOLGA8IPA6NC78 632 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 GOLGA8JA6NMD2 632 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 ADAM12O43184 909 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 RFPL2O75678 378 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 SNRPFP62306 86 aaKnown RBP17.03■□□□□ 0.32
CCDC78-216ENST00000544996 PSMD2Q13200 908 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 C9orf57Q5W0N0 161 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 ZNF280DQ6N043 979 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 DSTYKQ6XUX3 929 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 USP37Q86T82 979 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 RNF135Q8IUD6 432 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 BRSK2Q8IWQ3 736 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 CACTINQ8WUQ7 758 aaKnown RBP17.03■□□□□ 0.32
CCDC78-216ENST00000544996 SCFD1Q8WVM8 642 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 CCDC47Q96A33 483 aaKnown RBP17.03■□□□□ 0.32
CCDC78-216ENST00000544996 RHOBTB2Q9BYZ6 727 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 KIAA1586Q9HCI6 787 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 DPP3Q9NY33 737 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 CGNQ9P2M7 1197 aaKnown RBP17.03■□□□□ 0.32
CCDC78-216ENST00000544996 FBXW11Q9UKB1 542 aa17.03■□□□□ 0.32
CCDC78-216ENST00000544996 ARHGEF37A1IGU5 675 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 ZNF233A6NK53 670 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 PI4K2BG5E9Z4 385 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 M0QZQ0 153 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 DCXO43602 365 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 ZMYND10O75800 440 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 ZNF202O95125 648 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 SP100P23497 879 aaPredicted RBP17.02■□□□□ 0.32
CCDC78-216ENST00000544996 HOXD13P35453 343 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 AARSP49588 968 aaKnown RBP eCLIP17.02■□□□□ 0.32
CCDC78-216ENST00000544996 LILRA4P59901 499 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 TFAMQ00059 246 aaKnown RBP17.02■□□□□ 0.32
CCDC78-216ENST00000544996 KNOP1Q1ED39 458 aaKnown RBP17.02■□□□□ 0.32
CCDC78-216ENST00000544996 BMT2Q1RMZ1 405 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 UVSSAQ2YD98 709 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 CTXN3Q4LDR2 81 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 PPM1LQ5SGD2 360 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 SLC8B1Q6J4K2 584 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 KRBA2Q6ZNG9 492 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 CCDC149Q6ZUS6 474 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 RTL10Q7L3V2 364 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 NELFCDQ8IXH7 590 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 SMG7Q92540 1137 aaKnown RBP17.02■□□□□ 0.32
CCDC78-216ENST00000544996 OXCT2Q9BYC2 517 aaPredicted RBP17.02■□□□□ 0.32
CCDC78-216ENST00000544996 EPHX3Q9H6B9 360 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 AGPAT3Q9NRZ7 376 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 HSPBP1Q9NZL4 362 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 USTQ9Y2C2 406 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 CITO14578 2027 aa17.02■□□□□ 0.32
CCDC78-216ENST00000544996 ANO9A1A5B4 782 aa17.01■□□□□ 0.31
CCDC78-216ENST00000544996 PIRO00625 290 aa17.01■□□□□ 0.31
CCDC78-216ENST00000544996 TGFB1I1O43294 461 aa17.01■□□□□ 0.31
CCDC78-216ENST00000544996 KLRC4O43908 158 aa17.01■□□□□ 0.31
CCDC78-216ENST00000544996 RPN1P04843 607 aaKnown RBP17.01■□□□□ 0.31
CCDC78-216ENST00000544996 C8AP07357 584 aa17.01■□□□□ 0.31
CCDC78-216ENST00000544996 HNRNPA1P09651 372 aaKnown RBP eCLIP17.01■□□□□ 0.31
CCDC78-216ENST00000544996 ARPP19P56211 112 aa17.01■□□□□ 0.31
CCDC78-216ENST00000544996 YWHAHQ04917 246 aaPredicted RBP17.01■□□□□ 0.31
CCDC78-216ENST00000544996 MRPL58Q14197 206 aaKnown RBP17.01■□□□□ 0.31
CCDC78-216ENST00000544996 SURF1Q15526 300 aa17.01■□□□□ 0.31
CCDC78-216ENST00000544996 KMT5BQ4FZB7 885 aa17.01■□□□□ 0.31
CCDC78-216ENST00000544996 RSPO2Q6UXX9 243 aaPredicted RBP17.01■□□□□ 0.31
CCDC78-216ENST00000544996 OTOP3Q7RTS5 596 aa17.01■□□□□ 0.31
CCDC78-216ENST00000544996 TMEM130Q8N3G9 435 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms