RNA–Protein interactions for RNA: ENST00000543916.5

CD9-210, Transcript of CD9 molecule, humanhuman

TSL 1 (best)

Gene CD9, Length 969 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-210ENST00000543916 PLXNA3P51805 1871 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.31■□□□□ 0.2
CD9-210ENST00000543916 C2orf71A6NGG8 1288 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 LRRIQ3A6PVS8 624 aaPredicted RBP16.31■□□□□ 0.2
CD9-210ENST00000543916 C2CD2LO14523 706 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 CETN3O15182 167 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 CXCL14O95715 111 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 ITGB3P05106 788 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 CA8P35219 290 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 GTF2F1P35269 517 aaKnown RBP eCLIP16.31■□□□□ 0.2
CD9-210ENST00000543916 PSMC2P35998 433 aaKnown RBP16.31■□□□□ 0.2
CD9-210ENST00000543916 GLUD2P49448 558 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 NLRP12P59046 1061 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 DLG4P78352 724 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 FKBP3Q00688 224 aaKnown RBP16.31■□□□□ 0.2
CD9-210ENST00000543916 HYAL1Q12794 435 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 PAK1Q13153 545 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 USP41Q3LFD5 358 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 RTP2Q5QGT7 225 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 FAM171A1Q5VUB5 890 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 KIAA0319Q5VV43 1072 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 MRPL43Q8N983 215 aaKnown RBP16.31■□□□□ 0.2
CD9-210ENST00000543916 MLKLQ8NB16 471 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 CACTINQ8WUQ7 758 aaKnown RBP16.31■□□□□ 0.2
CD9-210ENST00000543916 ANKRD36BP1Q96IX9 119 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 MED15Q96RN5 788 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 FNBP1Q96RU3 617 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 SIX4Q9UIU6 781 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 NUB1Q9Y5A7 615 aa16.31■□□□□ 0.2
CD9-210ENST00000543916 SPTLC1O15269 473 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 LILRB3O75022 631 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 TNNC2P02585 160 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 URODP06132 367 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 TNNI1P19237 187 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 FGFR3P22607 806 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 TKTP29401 623 aaKnown RBP16.3■□□□□ 0.2
CD9-210ENST00000543916 POLR2BP30876 1174 aaKnown RBP16.3■□□□□ 0.2
CD9-210ENST00000543916 AARSP49588 968 aaKnown RBP eCLIP16.3■□□□□ 0.2
CD9-210ENST00000543916 CLDN10P78369 228 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 DSG1Q02413 1049 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 ELAVL2Q12926 359 aaKnown RBP16.3■□□□□ 0.2
CD9-210ENST00000543916 DUOXA2Q1HG44 320 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 C1orf220Q5T0J3 134 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 CAVIN1Q6NZI2 390 aaKnown RBP16.3■□□□□ 0.2
CD9-210ENST00000543916 FOXR2Q6PJQ5 311 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.3■□□□□ 0.2
CD9-210ENST00000543916 RBM23Q86U06 439 aaKnown RBP16.3■□□□□ 0.2
CD9-210ENST00000543916 CEP57Q86XR8 500 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 TMC2Q8TDI7 906 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 BORCS6Q96GS4 357 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 SUSD3Q96L08 255 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 MKNK1Q9BUB5 465 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 ITGA11Q9UKX5 1188 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 AGAP1Q9UPQ3 857 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 IRAK3Q9Y616 596 aa16.3■□□□□ 0.2
CD9-210ENST00000543916 BICDL2A1A5D9 508 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 PER2O15055 1255 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 SLC16A3O15427 465 aaKnown RBP16.29■□□□□ 0.2
CD9-210ENST00000543916 TRAPPC3O43617 180 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 TRIM49P0CI25 452 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 TRIM49CP0CI26 452 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 NRIP1P48552 1158 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 VAMP7P51809 220 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 LILRA4P59901 499 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 BFSP1Q12934 665 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 KLHL40Q2TBA0 621 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 KIAA1841Q6NSI8 718 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 PRSS55Q6UWB4 352 aaPredicted RBP16.29■□□□□ 0.2
CD9-210ENST00000543916 INTS8Q75QN2 995 aaKnown RBP16.29■□□□□ 0.2
CD9-210ENST00000543916 TRAPPC11Q7Z392 1133 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 CSGALNACT2Q8N6G5 542 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 RIN2Q8WYP3 895 aaPredicted RBP16.29■□□□□ 0.2
CD9-210ENST00000543916 TTPALQ9BTX7 342 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 MRPL17Q9NRX2 175 aaKnown RBP16.29■□□□□ 0.2
CD9-210ENST00000543916 RWDD2AQ9UIY3 292 aa16.29■□□□□ 0.2
CD9-210ENST00000543916 M0QZQ0 153 aa16.28■□□□□ 0.2
CD9-210ENST00000543916 KRT19P08727 400 aa16.28■□□□□ 0.2
CD9-210ENST00000543916 EPB41P11171 864 aaKnown RBP16.28■□□□□ 0.2
CD9-210ENST00000543916 KRT13P13646 458 aa16.28■□□□□ 0.2
CD9-210ENST00000543916 PTMSP20962 102 aa16.28■□□□□ 0.2
CD9-210ENST00000543916 TAF6P49848 677 aa16.28■□□□□ 0.2
CD9-210ENST00000543916 BMS1Q14692 1282 aaKnown RBP16.28■□□□□ 0.2
CD9-210ENST00000543916 DUSP6Q16828 381 aa16.28■□□□□ 0.2
CD9-210ENST00000543916 TDRD10Q5VZ19 366 aaKnown RBP16.28■□□□□ 0.2
CD9-210ENST00000543916 PIK3R5Q8WYR1 880 aa16.28■□□□□ 0.2
CD9-210ENST00000543916 ZNF560Q96MR9 790 aa16.28■□□□□ 0.2
CD9-210ENST00000543916 CEP63Q96MT8 703 aa16.28■□□□□ 0.2
CD9-210ENST00000543916 IGFLR1Q9H665 355 aa16.28■□□□□ 0.2
CD9-210ENST00000543916 TLE6Q9H808 572 aa16.28■□□□□ 0.2
CD9-210ENST00000543916 PCDHB8Q9UN66 801 aa16.28■□□□□ 0.2
CD9-210ENST00000543916 COL6A3P12111 3177 aa16.27■□□□□ 0.2
CD9-210ENST00000543916 LINC01565O15544 149 aa16.27■□□□□ 0.2
CD9-210ENST00000543916 CLASP2O75122 1294 aaKnown RBP16.27■□□□□ 0.2
CD9-210ENST00000543916 CST3P01034 146 aaPredicted RBP16.27■□□□□ 0.2
CD9-210ENST00000543916 C4BPAP04003 597 aaKnown RBP16.27■□□□□ 0.2
CD9-210ENST00000543916 CNPP09543 421 aaKnown RBP16.27■□□□□ 0.2
CD9-210ENST00000543916 RPL17P18621 184 aaKnown RBP16.27■□□□□ 0.2
CD9-210ENST00000543916 MCCD1P59942 119 aaPredicted RBP16.27■□□□□ 0.2
CD9-210ENST00000543916 RBP5P82980 135 aa16.27■□□□□ 0.2
CD9-210ENST00000543916 RBM10P98175 930 aaKnown RBP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms