RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 STILQ15468 1287 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 LRRC36Q1X8D7 754 aa20.27■□□□□ 0.84
HDAC4-215ENST00000543185 ZNF483Q8TF39 744 aaPredicted RBP20.27■□□□□ 0.84
HDAC4-215ENST00000543185 C3orf70A6NLC5 250 aaPredicted RBP20.27■□□□□ 0.83
HDAC4-215ENST00000543185 KCTD17Q8N5Z5 321 aa20.27■□□□□ 0.83
HDAC4-215ENST00000543185 MKL2Q9ULH7 1088 aa20.27■□□□□ 0.83
HDAC4-215ENST00000543185 UBXN8O00124 270 aa20.27■□□□□ 0.83
HDAC4-215ENST00000543185 CAND2O75155 1236 aa20.27■□□□□ 0.83
HDAC4-215ENST00000543185 STAT3P40763 770 aa20.27■□□□□ 0.83
HDAC4-215ENST00000543185 XPO7Q9UIA9 1087 aaKnown RBP20.27■□□□□ 0.83
HDAC4-215ENST00000543185 HNRNPH1P31943 449 aaKnown RBP20.26■□□□□ 0.83
HDAC4-215ENST00000543185 GPC3P51654 580 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 CABLES1Q8TDN4 633 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 GLMNQ92990 594 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 BTG4Q9NY30 223 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 DNALI1O14645 258 aaPredicted RBP20.26■□□□□ 0.83
HDAC4-215ENST00000543185 TRIM66O15016 1216 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 NPEPPSP55786 919 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 EIF3EP60228 445 aaKnown RBP20.26■□□□□ 0.83
HDAC4-215ENST00000543185 MEI1Q5TIA1 1274 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 LRRC49Q8IUZ0 686 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 ISCUQ9H1K1 167 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 PLEKHA5Q9HAU0 1116 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 KRT76Q01546 638 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 UNC45AQ9H3U1 944 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 SNRPAP09012 282 aaKnown RBP20.26■□□□□ 0.83
HDAC4-215ENST00000543185 ANXA11P50995 505 aaKnown RBP20.26■□□□□ 0.83
HDAC4-215ENST00000543185 TUBA8Q9NY65 449 aaPredicted RBP20.26■□□□□ 0.83
HDAC4-215ENST00000543185 SNRPFP62306 86 aaKnown RBP20.26■□□□□ 0.83
HDAC4-215ENST00000543185 MAPRE1Q15691 268 aaKnown RBP20.26■□□□□ 0.83
HDAC4-215ENST00000543185 PTGISQ16647 500 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 PNMA3Q9UL41 463 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 KCNN4O15554 427 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 KRT6AP02538 564 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 GNL1P36915 607 aaPredicted RBP20.26■□□□□ 0.83
HDAC4-215ENST00000543185 SPDYAQ5MJ70 313 aa20.26■□□□□ 0.83
HDAC4-215ENST00000543185 CYTH3O43739 400 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 NCALDP61601 193 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 PDAP1Q13442 181 aaKnown RBP20.25■□□□□ 0.83
HDAC4-215ENST00000543185 MTFR1Q15390 333 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 ZFP1Q6P2D0 407 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 PIGSQ96S52 555 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 GEMIN4P57678 1058 aaKnown RBP20.25■□□□□ 0.83
HDAC4-215ENST00000543185 FAM102AQ5T9C2 384 aaPredicted RBP20.25■□□□□ 0.83
HDAC4-215ENST00000543185 GALNT4Q8N4A0 578 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 RASGRP4Q8TDF6 673 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 ARHGEF3Q9NR81 526 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 HSPBP1Q9NZL4 362 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 BTBD7Q9P203 1132 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 TNFAIP8O95379 198 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 CITO14578 2027 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 MTMR1Q13613 665 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 CCDC149Q6ZUS6 474 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 FAM45AQ8TCE6 357 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 MMADHCQ9H3L0 296 aaPredicted RBP20.25■□□□□ 0.83
HDAC4-215ENST00000543185 GDAQ9Y2T3 454 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 GMEB1Q9Y692 573 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 FKBP6O75344 327 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 RGS4P49798 205 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 TM9SF1O15321 606 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 PCNX4Q63HM2 1172 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 OR6B3Q8NGW1 331 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 NQO1P15559 274 aaKnown RBP20.25■□□□□ 0.83
HDAC4-215ENST00000543185 PLEKHA7Q6IQ23 1121 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 CCDC60Q8IWA6 550 aaPredicted RBP20.25■□□□□ 0.83
HDAC4-215ENST00000543185 WNK4Q96J92 1243 aa20.25■□□□□ 0.83
HDAC4-215ENST00000543185 MRPL4Q9BYD3 311 aaKnown RBP20.25■□□□□ 0.83
HDAC4-215ENST00000543185 XPO1O14980 1071 aaKnown RBP20.24■□□□□ 0.83
HDAC4-215ENST00000543185 FNTAP49354 379 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 WDR93Q6P2C0 686 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 CCNI2Q6ZMN8 369 aaPredicted RBP20.24■□□□□ 0.83
HDAC4-215ENST00000543185 SPATA31E1Q6ZUB1 1445 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 PHF20L1A8MW92 1017 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 ARHGAP22Q7Z5H3 698 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 SULF1Q8IWU6 871 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 INPP5DQ92835 1189 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 SH3KBP1Q96B97 665 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 DEPDC7Q96QD5 511 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 LRRC1Q9BTT6 524 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 SF3B1O75533 1304 aaKnown RBP eCLIP20.24■□□□□ 0.833e-6■■■■■ 138.7
HDAC4-215ENST00000543185 PTK6Q13882 451 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 ZNF235Q14590 738 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 DUOXA2Q1HG44 320 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 KRT73Q86Y46 540 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 APPL2Q8NEU8 664 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 KRT84Q9NSB2 600 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 PHKA1P46020 1223 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 SCTRP47872 440 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 PRMT9Q6P2P2 845 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 COL23A1Q86Y22 540 aaPredicted RBP20.24■□□□□ 0.83
HDAC4-215ENST00000543185 RMND5BQ96G75 393 aaPredicted RBP20.24■□□□□ 0.83
HDAC4-215ENST00000543185 PDXKO00764 312 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 COPB2P35606 906 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 ITGA1P56199 1179 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 COPG2Q9UBF2 871 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 DTNAQ9Y4J8 743 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 ATP6V1B1P15313 513 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 IL12RB1P42701 662 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 TAF2Q6P1X5 1199 aa20.24■□□□□ 0.83
HDAC4-215ENST00000543185 SCUBE1Q8IWY4 988 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms