RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 ITGA4P13612 1032 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 CYP3A5P20815 502 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 SLC18A3Q16572 532 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 ZNF699Q32M78 642 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 SPOPLQ6IQ16 392 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 REXO1L1PQ8IX06 675 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 PPP1R13BQ96KQ4 1090 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 ADAM2Q99965 735 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 IFIH1Q9BYX4 1025 aaKnown RBP19.05■□□□□ 0.64
CLIP1-215ENST00000541108 NIF3L1Q9GZT8 377 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.05■□□□□ 0.64
CLIP1-215ENST00000541108 GIT1Q9Y2X7 761 aa19.05■□□□□ 0.64
CLIP1-215ENST00000541108 USP27XA6NNY8 438 aa19.04■□□□□ 0.64
CLIP1-215ENST00000541108 PNMA6AP0CW24 399 aaPredicted RBP19.04■□□□□ 0.64
CLIP1-215ENST00000541108 BMS1Q14692 1282 aaKnown RBP19.04■□□□□ 0.64
CLIP1-215ENST00000541108 ZNF662Q6ZS27 426 aa19.04■□□□□ 0.64
CLIP1-215ENST00000541108 ZNF571Q7Z3V5 609 aaPredicted RBP19.04■□□□□ 0.64
CLIP1-215ENST00000541108 FAM124BQ9H5Z6 455 aaPredicted RBP19.04■□□□□ 0.64
CLIP1-215ENST00000541108 UBN1Q9NPG3 1134 aa19.04■□□□□ 0.64
CLIP1-215ENST00000541108 RGS18Q9NS28 235 aa19.04■□□□□ 0.64
CLIP1-215ENST00000541108 CNTN6Q9UQ52 1028 aa19.04■□□□□ 0.64
CLIP1-215ENST00000541108 MGEA5O60502 916 aa19.03■□□□□ 0.64
CLIP1-215ENST00000541108 ATN1P54259 1190 aaPredicted RBP19.03■□□□□ 0.64
CLIP1-215ENST00000541108 ZNF667Q5HYK9 610 aa19.03■□□□□ 0.64
CLIP1-215ENST00000541108 SCARA3Q6AZY7 606 aa19.03■□□□□ 0.64
CLIP1-215ENST00000541108 ACRBPQ8NEB7 543 aa19.03■□□□□ 0.64
CLIP1-215ENST00000541108 PGBD4Q96DM1 585 aa19.03■□□□□ 0.64
CLIP1-215ENST00000541108 TMEM106CQ9BVX2 250 aa19.03■□□□□ 0.64
CLIP1-215ENST00000541108 CXCL16Q9H2A7 254 aa19.03■□□□□ 0.64
CLIP1-215ENST00000541108 ADAMTS1Q9UHI8 967 aa19.03■□□□□ 0.64
CLIP1-215ENST00000541108 AGAP1Q9UPQ3 857 aa19.03■□□□□ 0.64
CLIP1-215ENST00000541108 PDCD11Q14690 1871 aaKnown RBP19.03■□□□□ 0.64
CLIP1-215ENST00000541108 TUBB4AP04350 444 aa19.02■□□□□ 0.64
CLIP1-215ENST00000541108 ACO1P21399 889 aaKnown RBP19.02■□□□□ 0.64
CLIP1-215ENST00000541108 POLR2BP30876 1174 aaKnown RBP19.02■□□□□ 0.64
CLIP1-215ENST00000541108 CLCN1P35523 988 aa19.02■□□□□ 0.64
CLIP1-215ENST00000541108 USP8P40818 1118 aa19.02■□□□□ 0.64
CLIP1-215ENST00000541108 BPIFB4P59827 614 aa19.02■□□□□ 0.64
CLIP1-215ENST00000541108 FAAP100Q0VG06 881 aa19.02■□□□□ 0.64
CLIP1-215ENST00000541108 MYO1EQ12965 1108 aa19.02■□□□□ 0.64
CLIP1-215ENST00000541108 WDR72Q3MJ13 1102 aa19.02■□□□□ 0.64
CLIP1-215ENST00000541108 C10orf76Q5T2E6 689 aa19.02■□□□□ 0.64
CLIP1-215ENST00000541108 TXLNBQ8N3L3 684 aa19.02■□□□□ 0.64
CLIP1-215ENST00000541108 LRRC52Q8N7C0 313 aa19.02■□□□□ 0.64
CLIP1-215ENST00000541108 SYT11Q9BT88 431 aa19.02■□□□□ 0.64
CLIP1-215ENST00000541108 LUC7LQ9NQ29 371 aaKnown RBP19.02■□□□□ 0.64
CLIP1-215ENST00000541108 SLC38A7Q9NVC3 462 aa19.02■□□□□ 0.64
CLIP1-215ENST00000541108 KLK14Q9P0G3 267 aa19.02■□□□□ 0.64
CLIP1-215ENST00000541108 REXO2Q9Y3B8 237 aaKnown RBP19.02■□□□□ 0.64
CLIP1-215ENST00000541108 EOMESO95936 686 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 P4HA1P13674 534 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 YWHAEP62258 255 aaKnown RBP19.01■□□□□ 0.63
CLIP1-215ENST00000541108 GFPT1Q06210 699 aaPredicted RBP19.01■□□□□ 0.63
CLIP1-215ENST00000541108 SLC24A5Q71RS6 500 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 ELMO3Q96BJ8 720 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 HPDLQ96IR7 371 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 ARID3AQ99856 593 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.01■□□□□ 0.63
CLIP1-215ENST00000541108 A0A087X0T9 212 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 ANO9A1A5B4 782 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 ZNF263O14978 683 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 CYP26A1O43174 497 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 CLSTN1O94985 981 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 FAM228BP0C875 321 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 TLE2Q04725 743 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 PLEKHG4Q58EX7 1191 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 GLRA4Q5JXX5 417 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 AGMOQ6ZNB7 445 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 NYAP1Q6ZVC0 841 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 UBR7Q8N806 425 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 GSTCDQ8NEC7 633 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 APBB2Q92870 758 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 PPP1R10Q96QC0 940 aaKnown RBP19.01■□□□□ 0.63
CLIP1-215ENST00000541108 BCO2Q9BYV7 579 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 TSPYL2Q9H2G4 693 aaPredicted RBP19.01■□□□□ 0.63
CLIP1-215ENST00000541108 HIPK3Q9H422 1215 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 C11orf49Q9H6J7 331 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 CYP3A43Q9HB55 503 aa19.01■□□□□ 0.63
CLIP1-215ENST00000541108 RRAGDQ9NQL2 400 aaPredicted RBP19.01■□□□□ 0.63
CLIP1-215ENST00000541108 UMODL1Q5DID0 1318 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 C9IYK1 514 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 PIRO00625 290 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 PTGESO14684 152 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 NBNO60934 754 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 CYP11B1P15538 503 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 ATF7P17544 494 aaPredicted RBP19■□□□□ 0.63
CLIP1-215ENST00000541108 ASPAP45381 313 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 VAV2P52735 878 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 FAM189BP81408 668 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 CYP27A1Q02318 531 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 GPNMBQ14956 572 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 PTPN14Q15678 1187 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 TRIM60Q495X7 471 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 ECHDC2Q86YB7 292 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 GPIHBP1Q8IV16 184 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 TTC39CQ8N584 583 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 SLC30A5Q8TAD4 765 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 EPS8L1Q8TE68 723 aa19■□□□□ 0.63
CLIP1-215ENST00000541108 DIS3LQ8TF46 1054 aaKnown RBP19■□□□□ 0.63
CLIP1-215ENST00000541108 AGPAT1Q99943 283 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms