RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 B3GALNT1O75752 331 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 ITGA4P13612 1032 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 ZNF12P17014 697 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 VCLP18206 1134 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 CES1P23141 567 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 FOXN2P32314 431 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 RFC4P35249 363 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 ERFP50548 548 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 NONOQ15233 471 aaKnown RBP eCLIP10□□□□□ -0.81
CLIP1-214ENST00000540539 CLEC4GQ6UXB4 293 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 BTNL9Q6UXG8 535 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 RFX8Q6ZV50 586 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 ITIH5Q86UX2 942 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 ZNF410Q86VK4 478 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 ERI1Q8IV48 349 aaKnown RBP10□□□□□ -0.81
CLIP1-214ENST00000540539 NOSTRINQ8IVI9 506 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 LZTR1Q8N653 840 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 RNF169Q8NCN4 708 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 HCAR2Q8TDS4 363 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 C8orf48Q96LL4 319 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 MAGEB18Q96M61 343 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 PCMTD1Q96MG8 357 aaPredicted RBP10□□□□□ -0.81
CLIP1-214ENST00000540539 CYTH2Q99418 400 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 BTBD10Q9BSF8 475 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 MRPL1Q9BYD6 325 aaKnown RBP10□□□□□ -0.81
CLIP1-214ENST00000540539 ZDHHC18Q9NUE0 388 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 SRP68Q9UHB9 627 aaKnown RBP10□□□□□ -0.81
CLIP1-214ENST00000540539 SLC12A7Q9Y666 1083 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 ANKRD36CQ5JPF3 1778 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 A6NL46 340 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 KLRF2D3W0D1 207 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 CCDC22O60826 627 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 CLASP2O75122 1294 aaKnown RBP9.99□□□□□ -0.81
CLIP1-214ENST00000540539 GAS8O95995 478 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 EIF2S1P05198 315 aaKnown RBP9.99□□□□□ -0.81
CLIP1-214ENST00000540539 ABCB1P08183 1280 aaPredicted RBP9.99□□□□□ -0.81
CLIP1-214ENST00000540539 FOSL1P15407 271 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 STX2P32856 288 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 ETFBP38117 255 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 KCNC4Q03721 635 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 SFT2D3Q587I9 215 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 SPDYAQ5MJ70 313 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 MFSD5Q6N075 450 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 TTC23LQ6PF05 361 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 BORAQ6PGQ7 559 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 DCLRE1AQ6PJP8 1040 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 POTEHQ6S545 545 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 ISLR2Q6UXK2 745 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 ILDR2Q71H61 639 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 CROCCP2Q86T23 111 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.99□□□□□ -0.81
CLIP1-214ENST00000540539 SCYL3Q8IZE3 742 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 CPSF7Q8N684 471 aaKnown RBP9.99□□□□□ -0.81
CLIP1-214ENST00000540539 NATD1Q8N6N6 113 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 MCUR1Q96AQ8 359 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 FBXL18Q96ME1 805 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 LIN28AQ9H9Z2 209 aaKnown RBP9.99□□□□□ -0.81
CLIP1-214ENST00000540539 COMMD8Q9NX08 183 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 RRN3Q9NYV6 651 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 AK5Q9Y6K8 562 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 RPTORQ8N122 1335 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 SCN7AQ01118 1682 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 A0A1W2PQJ5 194 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 TSPY2A6NKD2 308 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 AP3B1O00203 1094 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 PIK3CDO00329 1044 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 HNRNPCL1O60812 293 aaKnown RBP9.99□□□□□ -0.81
CLIP1-214ENST00000540539 BAIAP3O94812 1187 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 DDHD2O94830 711 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 CSPG5O95196 566 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 TSPY3P0CV98 308 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 TSPY8P0CW00 308 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 ATP6V1B1P15313 513 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 EEF1GP26641 437 aaKnown RBP9.99□□□□□ -0.81
CLIP1-214ENST00000540539 CETN2P41208 172 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 TSPY1Q01534 308 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 TMEM266Q2M3C6 531 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 MCMDC2Q4G0Z9 681 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 MAP3K21Q5TCX8 1036 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 PPP1R21Q6ZMI0 780 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 FBXL16Q8N461 479 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 LSMEM1Q8N8F7 131 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 LILRB4Q8NHJ6 448 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 LILRB1Q8NHL6 650 aaPredicted RBP9.99□□□□□ -0.81
CLIP1-214ENST00000540539 OSCP1Q8WVF1 389 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 BIRC8Q96P09 236 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 TTC1Q99614 292 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 ISCA1Q9BUE6 129 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 SEMA4AQ9H3S1 761 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 XAB2Q9HCS7 855 aaKnown RBP9.99□□□□□ -0.81
CLIP1-214ENST00000540539 KCNK9Q9NPC2 374 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 CCDC177Q9NQR7 707 aaPredicted RBP9.99□□□□□ -0.81
CLIP1-214ENST00000540539 SAR1AQ9NR31 198 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 USP40Q9NVE5 1235 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 ERVK-11Q9UQG0 969 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 LZTS1Q9Y250 596 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 ZNF652Q9Y2D9 606 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 STARD13Q9Y3M8 1113 aa9.99□□□□□ -0.81
CLIP1-214ENST00000540539 NOC2LQ9Y3T9 749 aaKnown RBP9.99□□□□□ -0.81
CLIP1-214ENST00000540539 PCDHGA11Q9Y5H2 935 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms