RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 SPDYE4A6NLX3 237 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 LOC730098B7Z3J9 87 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 EIF3DO15371 548 aaKnown RBP eCLIP16.35■□□□□ 0.21
UBE3B-212ENST00000540230 TRAPPC3O43617 180 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 MCM4P33991 863 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 TMEM132DQ14C87 1099 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 VARS2Q5ST30 1063 aaKnown RBP16.35■□□□□ 0.21
UBE3B-212ENST00000540230 CES5AQ6NT32 575 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 ARMCX5Q6P1M9 558 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 CD302Q8IX05 232 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 NELFCDQ8IXH7 590 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 SUSD3Q96L08 255 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 EPHX3Q9H6B9 360 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 PVALEFA0A1B0GWK0 134 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 TGFB1I1O43294 461 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 OR1D2P34982 312 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 CREMQ03060 361 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 SCARA3Q6AZY7 606 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 GPR149Q86SP6 731 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 BRSK2Q8IWQ3 736 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 KREMEN2Q8NCW0 462 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 NOC3LQ8WTT2 800 aaKnown RBP16.35■□□□□ 0.21
UBE3B-212ENST00000540230 DOCK6Q96HP0 2047 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 ASB7Q9H672 318 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 FBXW11Q9UKB1 542 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 CDY1Q9Y6F8 540 aa16.35■□□□□ 0.21
UBE3B-212ENST00000540230 TSC2P49815 1807 aa16.34■□□□□ 0.21
UBE3B-212ENST00000540230 SPTLC1O15269 473 aa16.34■□□□□ 0.21
UBE3B-212ENST00000540230 XPOTO43592 962 aaKnown RBP16.34■□□□□ 0.21
UBE3B-212ENST00000540230 AARSP49588 968 aaKnown RBP eCLIP16.34■□□□□ 0.21
UBE3B-212ENST00000540230 MRPL58Q14197 206 aaKnown RBP16.34■□□□□ 0.21
UBE3B-212ENST00000540230 KMT5BQ4FZB7 885 aa16.34■□□□□ 0.21
UBE3B-212ENST00000540230 ANKS3Q6ZW76 656 aa16.34■□□□□ 0.21
UBE3B-212ENST00000540230 STXBP4Q6ZWJ1 553 aa16.34■□□□□ 0.21
UBE3B-212ENST00000540230 KIAA0895Q8NCT3 520 aa16.34■□□□□ 0.21
UBE3B-212ENST00000540230 BEST2Q8NFU1 509 aa16.34■□□□□ 0.21
UBE3B-212ENST00000540230 ZNF707Q96C28 371 aaPredicted RBP16.34■□□□□ 0.21
UBE3B-212ENST00000540230 POP1Q99575 1024 aaKnown RBP16.34■□□□□ 0.21
UBE3B-212ENST00000540230 DERAQ9Y315 318 aa16.34■□□□□ 0.21
UBE3B-212ENST00000540230 C2CD2Q9Y426 696 aa16.34■□□□□ 0.21
UBE3B-212ENST00000540230 TIMM13Q9Y5L4 95 aaPredicted RBP16.34■□□□□ 0.21
UBE3B-212ENST00000540230 BACE2Q9Y5Z0 518 aa16.34■□□□□ 0.21
UBE3B-212ENST00000540230 CCDC195A0A1B0GUA6 201 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 ANO9A1A5B4 782 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 SYN3O14994 580 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 CLIC2O15247 247 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 EXTL3O43909 919 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 TBC1D4O60343 1298 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 MTHFRP42898 656 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 POU5F1Q01860 360 aaKnown RBP16.33■□□□□ 0.2
UBE3B-212ENST00000540230 STK4Q13043 487 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 RAB33AQ14088 237 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 C9orf57Q5W0N0 161 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 PDXDC1Q6P996 788 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 KRBA2Q6ZNG9 492 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 RNF135Q8IUD6 432 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 CBWD2Q8IUF1 395 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 GPD1LQ8N335 351 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 CMASQ8NFW8 434 aaPredicted RBP16.33■□□□□ 0.2
UBE3B-212ENST00000540230 RIPOR3Q96MK2 946 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 TSPAN18Q96SJ8 248 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 PLEKHA4Q9H4M7 779 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 TSHZ2Q9NRE2 1034 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 AGPAT3Q9NRZ7 376 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 RBAKQ9NYW8 714 aaPredicted RBP16.33■□□□□ 0.2
UBE3B-212ENST00000540230 HSPBP1Q9NZL4 362 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 USP25Q9UHP3 1055 aa16.33■□□□□ 0.2
UBE3B-212ENST00000540230 C2CD4DB7Z1M9 353 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 M0QZQ0 153 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 TULP1O00294 542 aaPredicted RBP16.32■□□□□ 0.2
UBE3B-212ENST00000540230 PIRO00625 290 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 ZNF202O95125 648 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 LDHAP00338 332 aaKnown RBP16.32■□□□□ 0.2
UBE3B-212ENST00000540230 ROR1Q01973 937 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 BMT2Q1RMZ1 405 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 ATAT1Q5SQI0 421 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 C15orf39Q6ZRI6 1047 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 HDAC7Q8WUI4 952 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 NECTIN4Q96NY8 510 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 PDE11AQ9HCR9 933 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 EXOC1Q9NV70 894 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 MUTYHQ9UIF7 546 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 PCDHB8Q9UN66 801 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 UBE4BO95155 1302 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 PTPRJQ12913 1337 aa16.32■□□□□ 0.2
UBE3B-212ENST00000540230 WDR27A2RRH5 827 aa16.31■□□□□ 0.2
UBE3B-212ENST00000540230 ZMYND10O75800 440 aa16.31■□□□□ 0.2
UBE3B-212ENST00000540230 IL18RAPO95256 599 aa16.31■□□□□ 0.2
UBE3B-212ENST00000540230 PAPLNO95428 1278 aa16.31■□□□□ 0.2
UBE3B-212ENST00000540230 C1RP00736 705 aa16.31■□□□□ 0.2
UBE3B-212ENST00000540230 LILRA4P59901 499 aa16.31■□□□□ 0.2
UBE3B-212ENST00000540230 DPYDQ12882 1025 aa16.31■□□□□ 0.2
UBE3B-212ENST00000540230 LMBRD2Q68DH5 695 aaPredicted RBP16.31■□□□□ 0.2
UBE3B-212ENST00000540230 SLC8B1Q6J4K2 584 aa16.31■□□□□ 0.2
UBE3B-212ENST00000540230 DPP3Q9NY33 737 aa16.31■□□□□ 0.2
UBE3B-212ENST00000540230 FBXL5Q9UKA1 691 aa16.31■□□□□ 0.2
UBE3B-212ENST00000540230 PI4K2BG5E9Z4 385 aa16.3■□□□□ 0.2
UBE3B-212ENST00000540230 RPN1P04843 607 aaKnown RBP16.3■□□□□ 0.2
UBE3B-212ENST00000540230 C8AP07357 584 aa16.3■□□□□ 0.2
UBE3B-212ENST00000540230 ARPP19P56211 112 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms