RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 FAM186AA6NE01 2351 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 NOTCH4Q99466 2003 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 TTC26A0AVF1 554 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 FAM170BA6NMN3 283 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 LACTBL1A8MY62 500 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 MOSPD3O75425 235 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 ECI2O75521 394 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 CLTAP09496 248 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 MARCKSP29966 332 aaPredicted RBP9.22□□□□□ -0.93
USP28-203ENST00000537490 LRPAP1P30533 357 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 MATR3P43243 847 aaKnown RBP eCLIP9.22□□□□□ -0.93
USP28-203ENST00000537490 GUCY2FP51841 1108 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 NCKAP1LP55160 1127 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 PFKPQ01813 784 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 PRKCQQ04759 706 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 GRIN1Q05586 938 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 ADCY1Q08828 1119 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 DHX8Q14562 1220 aaKnown RBP9.22□□□□□ -0.93
USP28-203ENST00000537490 UBXN2BQ14CS0 331 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 ZBTB41Q5SVQ8 909 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 TPGS2Q68CL5 300 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 ZNF280DQ6N043 979 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 RNF19BQ6ZMZ0 732 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 HAUS6Q7Z4H7 955 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 APPL2Q8NEU8 664 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 KCNG4Q8TDN1 519 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 KCNN1Q92952 543 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 KIF12Q96FN5 646 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 ZSWIM3Q96MP5 696 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 REEP2Q9BRK0 252 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 PLEKHA5Q9HAU0 1116 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 LTB4R2Q9NPC1 389 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 BLOC1S4Q9NUP1 217 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 GDE1Q9NZC3 331 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 KCND2Q9NZV8 630 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 CEP72Q9P209 647 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 LARSQ9P2J5 1176 aaKnown RBP9.22□□□□□ -0.93
USP28-203ENST00000537490 AFF4Q9UHB7 1163 aaKnown RBP9.22□□□□□ -0.93
USP28-203ENST00000537490 TIMM13Q9Y5L4 95 aaPredicted RBP9.22□□□□□ -0.93
USP28-203ENST00000537490 INSL5Q9Y5Q6 135 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 COL4A3Q01955 1670 aa9.22□□□□□ -0.93
USP28-203ENST00000537490 TRIP11Q15643 1979 aa9.21□□□□□ -0.93
USP28-203ENST00000537490 SHISA7A6NL88 538 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 M0QZQ0 153 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 ZNF197O14709 1029 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 PPEF2O14830 753 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 FAM189A1O60320 539 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 VNN2O95498 520 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 LMNAP02545 664 aaKnown RBP9.21□□□□□ -0.94
USP28-203ENST00000537490 OR4Q2P0C623 313 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 GJA1P17302 382 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 FCARP24071 287 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 TARSP26639 723 aaKnown RBP9.21□□□□□ -0.94
USP28-203ENST00000537490 UBA7P41226 1012 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 AARSP49588 968 aaKnown RBP eCLIP9.21□□□□□ -0.94
USP28-203ENST00000537490 TWF1Q12792 350 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 GRM2Q14416 872 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 MCM6Q14566 821 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 ENOX2Q16206 610 aaKnown RBP9.21□□□□□ -0.94
USP28-203ENST00000537490 FAM78AQ5JUQ0 283 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 LARP1BQ659C4 914 aaKnown RBP9.21□□□□□ -0.94
USP28-203ENST00000537490 TPRG1Q6ZUI0 275 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 PDZD4Q76G19 769 aaPredicted RBP9.21□□□□□ -0.94
USP28-203ENST00000537490 GPBP1Q86WP2 473 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 MYCT1Q8N699 235 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 ELSPBP1Q96BH3 223 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 BICD1Q96G01 975 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 AK8Q96MA6 479 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 ZNF512Q96ME7 567 aaPredicted RBP9.21□□□□□ -0.94
USP28-203ENST00000537490 BCO2Q9BYV7 579 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 OSBPL6Q9BZF3 934 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 CRISPLD1Q9H336 500 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 SEMA4AQ9H3S1 761 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 HEBP1Q9NRV9 189 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 ODF2LQ9ULJ1 636 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 TBX20Q9UMR3 447 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 UBQLN1Q9UMX0 589 aaKnown RBP9.21□□□□□ -0.94
USP28-203ENST00000537490 SMC3Q9UQE7 1217 aa9.21□□□□□ -0.94
USP28-203ENST00000537490 H0YCG3 227 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 OGTO15294 1046 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 SLC26A4O43511 780 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 TRAK2O60296 914 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 MICAL2O94851 1124 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 FAM13AO94988 1023 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 OAZ2O95190 189 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 PIGRP01833 764 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 ADRB2P07550 413 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 MYL4P12829 197 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 CPB1P15086 417 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 CYP3A5P20815 502 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 LIG4P49917 911 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 ZNF131P52739 623 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 EPHA5P54756 1037 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 YWHAHQ04917 246 aaPredicted RBP9.2□□□□□ -0.94
USP28-203ENST00000537490 PPP2R3AQ06190 1150 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 FZD5Q13467 585 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 KARSQ15046 597 aaKnown RBP9.2□□□□□ -0.94
USP28-203ENST00000537490 CYP4A22Q5TCH4 519 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 IQCEQ6IPM2 695 aa9.2□□□□□ -0.94
USP28-203ENST00000537490 SLC39A4Q6P5W5 647 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms