RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 SF3A1Q15459 793 aaKnown RBP14.29□□□□□ -0.12
RTN3-207ENST00000536011 PARM1Q6UWI2 310 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 RSPO2Q6UXX9 243 aaPredicted RBP14.29□□□□□ -0.12
RTN3-207ENST00000536011 NPAS3Q8IXF0 933 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 TCEAL8Q8IYN2 117 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 LARP4BQ92615 738 aaKnown RBP14.29□□□□□ -0.12
RTN3-207ENST00000536011 RAD54LQ92698 747 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 FGF14Q92915 247 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 KIF12Q96FN5 646 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 ZHX3Q9H4I2 956 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 CYP4F11Q9HBI6 524 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 TUBGCP4Q9UGJ1 667 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 FBXL5Q9UKA1 691 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 TBX20Q9UMR3 447 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 PCDHB8Q9UN66 801 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 CFAP54Q96N23 3096 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 TTC26A0AVF1 554 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 WDR27A2RRH5 827 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 ZNF197O14709 1029 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 OGTO15294 1046 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 TRAK2O60296 914 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 TBC1D4O60343 1298 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 RHOP08100 348 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 CPB1P15086 417 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 IGFBP6P24592 240 aaPredicted RBP14.28□□□□□ -0.12
RTN3-207ENST00000536011 LRPAP1P30533 357 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 YWHAHQ04917 246 aaPredicted RBP14.28□□□□□ -0.12
RTN3-207ENST00000536011 MRPL58Q14197 206 aaKnown RBP14.28□□□□□ -0.12
RTN3-207ENST00000536011 PDCD11Q14690 1871 aaKnown RBP14.28□□□□□ -0.12
RTN3-207ENST00000536011 KARSQ15046 597 aaKnown RBP14.28□□□□□ -0.12
RTN3-207ENST00000536011 ANGPT1Q15389 498 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 SEZ6Q53EL9 994 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 IQCEQ6IPM2 695 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 USP37Q86T82 979 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 CD302Q8IX05 232 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 KRI1Q8N9T8 703 aaKnown RBP14.28□□□□□ -0.12
RTN3-207ENST00000536011 LEMD2Q8NC56 503 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 ITFG1Q8TB96 612 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 DDX12PQ92771 950 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 MSTO1Q9BUK6 570 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 RPF1Q9H9Y2 349 aaKnown RBP14.28□□□□□ -0.12
RTN3-207ENST00000536011 HCFC1R1Q9NWW0 138 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 DNMT3BQ9UBC3 853 aaKnown RBP14.28□□□□□ -0.12
RTN3-207ENST00000536011 CCDC39Q9UFE4 941 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 AFF4Q9UHB7 1163 aaKnown RBP14.28□□□□□ -0.12
RTN3-207ENST00000536011 SIT1Q9Y3P8 196 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 INSL5Q9Y5Q6 135 aa14.28□□□□□ -0.12
RTN3-207ENST00000536011 PI15O43692 258 aa14.27□□□□□ -0.13
RTN3-207ENST00000536011 ECI2O75521 394 aa14.27□□□□□ -0.13
RTN3-207ENST00000536011 MICAL2O94851 1124 aa14.27□□□□□ -0.13
RTN3-207ENST00000536011 VASPP50552 380 aaPredicted RBP14.27□□□□□ -0.13
RTN3-207ENST00000536011 PRKCQQ04759 706 aa14.27□□□□□ -0.13
RTN3-207ENST00000536011 PLD1Q13393 1074 aa14.27□□□□□ -0.13
RTN3-207ENST00000536011 CUL4AQ13619 759 aa14.27□□□□□ -0.13
RTN3-207ENST00000536011 MCM6Q14566 821 aa14.27□□□□□ -0.13
RTN3-207ENST00000536011 CYP4A22Q5TCH4 519 aa14.27□□□□□ -0.13
RTN3-207ENST00000536011 PDZD4Q76G19 769 aaPredicted RBP14.27□□□□□ -0.13
RTN3-207ENST00000536011 MAP4K3Q8IVH8 894 aa14.27□□□□□ -0.13
RTN3-207ENST00000536011 BEST2Q8NFU1 509 aa14.27□□□□□ -0.13
RTN3-207ENST00000536011 NKD2Q969F2 451 aaPredicted RBP14.27□□□□□ -0.13
RTN3-207ENST00000536011 CCSER1Q9C0I3 900 aa14.27□□□□□ -0.13
RTN3-207ENST00000536011 BLOC1S4Q9NUP1 217 aa14.27□□□□□ -0.13
RTN3-207ENST00000536011 STK17AQ9UEE5 414 aa14.27□□□□□ -0.13
RTN3-207ENST00000536011 A0A0B4J269 797 aa14.26□□□□□ -0.13
RTN3-207ENST00000536011 M0QZQ0 153 aa14.26□□□□□ -0.13
RTN3-207ENST00000536011 MEFVO15553 781 aaPredicted RBP14.26□□□□□ -0.13
RTN3-207ENST00000536011 DDIT3P35638 169 aa14.26□□□□□ -0.13
RTN3-207ENST00000536011 STARD6P59095 220 aa14.26□□□□□ -0.13
RTN3-207ENST00000536011 GPC5P78333 572 aa14.26□□□□□ -0.13
RTN3-207ENST00000536011 ENOX2Q16206 610 aaKnown RBP14.26□□□□□ -0.13
RTN3-207ENST00000536011 SLFN12LQ6IEE8 588 aa14.26□□□□□ -0.13
RTN3-207ENST00000536011 DSTYKQ6XUX3 929 aa14.26□□□□□ -0.13
RTN3-207ENST00000536011 PJA1Q8NG27 643 aa14.26□□□□□ -0.13
RTN3-207ENST00000536011 ING5Q8WYH8 240 aa14.26□□□□□ -0.13
RTN3-207ENST00000536011 HVCN1Q96D96 273 aa14.26□□□□□ -0.13
RTN3-207ENST00000536011 ZNF512Q96ME7 567 aaPredicted RBP14.26□□□□□ -0.13
RTN3-207ENST00000536011 KXD1Q9BQD3 176 aa14.26□□□□□ -0.13
RTN3-207ENST00000536011 CORO1BQ9BR76 489 aa14.26□□□□□ -0.13
RTN3-207ENST00000536011 SEL1LQ9UBV2 794 aa14.26□□□□□ -0.13
RTN3-207ENST00000536011 DERAQ9Y315 318 aa14.26□□□□□ -0.13
RTN3-207ENST00000536011 MYH15Q9Y2K3 1946 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 PRR23AA6NEV1 266 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 OR6C75A6NL08 312 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 LACTBL1A8MY62 500 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 FAM189A1O60320 539 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 OAZ2O95190 189 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 ODC1P11926 461 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 TNFSF9P41273 254 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 MAGEA9P43362 315 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 AARSP49588 968 aaKnown RBP eCLIP14.25□□□□□ -0.13
RTN3-207ENST00000536011 GTF2BQ00403 316 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 SPAG1Q07617 926 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 ADCY1Q08828 1119 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 MLF2Q15773 248 aaPredicted RBP14.25□□□□□ -0.13
RTN3-207ENST00000536011 ZBTB6Q15916 424 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 ZC3H14Q6PJT7 736 aaKnown RBP14.25□□□□□ -0.13
RTN3-207ENST00000536011 FRMD5Q7Z6J6 570 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 ELSPBP1Q96BH3 223 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 FAM212AQ96EL1 285 aa14.25□□□□□ -0.13
RTN3-207ENST00000536011 HAPLN2Q9GZV7 340 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms