RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 MKNK1Q9BUB5 465 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 ZBP1Q9H171 429 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 EYSQ5T1H1 3165 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 SF3B1O75533 1304 aaKnown RBP eCLIP13.04□□□□□ -0.32
CHD4-203ENST00000535717 ATG2AQ2TAZ0 1938 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 I3L4J1 428 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 PIRO00625 290 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 SLC16A3O15427 465 aaKnown RBP13.03□□□□□ -0.32
CHD4-203ENST00000535717 TNNC2P02585 160 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 SOD2P04179 222 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 ITGB3P05106 788 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 EPB41P11171 864 aaKnown RBP13.03□□□□□ -0.32
CHD4-203ENST00000535717 FOSL2P15408 326 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 ERCC5P28715 1186 aaPredicted RBP13.03□□□□□ -0.32
CHD4-203ENST00000535717 BRCC3P46736 316 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 VAMP7P51809 220 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 MCCD1P59942 119 aaPredicted RBP13.03□□□□□ -0.32
CHD4-203ENST00000535717 INTS8Q75QN2 995 aaKnown RBP13.03□□□□□ -0.32
CHD4-203ENST00000535717 TMC7Q7Z402 723 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 CSGALNACT2Q8N6G5 542 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 MICAL1Q8TDZ2 1067 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 AUTS2Q8WXX7 1259 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 ANKRD36BP1Q96IX9 119 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 CEP63Q96MT8 703 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 HERC2P3Q9BVR0 1158 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 ENTPD7Q9NQZ7 604 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 CHST7Q9NS84 486 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 STK39Q9UEW8 545 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 DACH1Q9UI36 760 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 SIX4Q9UIU6 781 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 ITGA11Q9UKX5 1188 aa13.03□□□□□ -0.32
CHD4-203ENST00000535717 HIDE1A8MVS5 230 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 SPTLC1O15269 473 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 TRAPPC3O43617 180 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 CXCL14O95715 111 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 TRIM49P0CI25 452 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 TRIM49CP0CI26 452 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 CTSAP10619 480 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 KRT13P13646 458 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 POLR2BP30876 1174 aaKnown RBP13.02□□□□□ -0.33
CHD4-203ENST00000535717 AARSP49588 968 aaKnown RBP eCLIP13.02□□□□□ -0.33
CHD4-203ENST00000535717 LILRA4P59901 499 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 ENPEPQ07075 957 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 ELAVL2Q12926 359 aaKnown RBP13.02□□□□□ -0.33
CHD4-203ENST00000535717 BFSP1Q12934 665 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 STX1AQ16623 288 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 USP41Q3LFD5 358 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 TIGD5Q53EQ6 642 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 CT47A1Q5JQC4 288 aaPredicted RBP13.02□□□□□ -0.33
CHD4-203ENST00000535717 FAM171A1Q5VUB5 890 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 KIAA0319Q5VV43 1072 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 PLPP4Q5VZY2 271 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 PDE12Q6L8Q7 609 aaKnown RBP13.02□□□□□ -0.33
CHD4-203ENST00000535717 TRAPPC11Q7Z392 1133 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 FILIP1Q7Z7B0 1213 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 MRPL43Q8N983 215 aaKnown RBP13.02□□□□□ -0.33
CHD4-203ENST00000535717 SRRTQ9BXP5 876 aaKnown RBP13.02□□□□□ -0.33
CHD4-203ENST00000535717 NGRNQ9NPE2 291 aaKnown RBP13.02□□□□□ -0.33
CHD4-203ENST00000535717 ANO10Q9NW15 660 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 AGAP1Q9UPQ3 857 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 NUB1Q9Y5A7 615 aa13.02□□□□□ -0.33
CHD4-203ENST00000535717 SCN1AP35498 2009 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 PRUNE2Q8WUY3 3088 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 C2orf71A6NGG8 1288 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 C2CD2LO14523 706 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 IKBKBO14920 756 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 LILRB3O75022 631 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 CST3P01034 146 aaPredicted RBP13.01□□□□□ -0.33
CHD4-203ENST00000535717 C4BPAP04003 597 aaKnown RBP13.01□□□□□ -0.33
CHD4-203ENST00000535717 KRT19P08727 400 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 FGFR3P22607 806 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 GLUD2P49448 558 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 AP3M2P53677 418 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 RBP5P82980 135 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 DSG1Q02413 1049 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 TYRO3Q06418 890 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 PPP3CAQ08209 521 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 SMC1AQ14683 1233 aaKnown RBP13.01□□□□□ -0.33
CHD4-203ENST00000535717 PTPN14Q15678 1187 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 RTP2Q5QGT7 225 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 TDRD10Q5VZ19 366 aaKnown RBP13.01□□□□□ -0.33
CHD4-203ENST00000535717 C11orf57Q6ZUT1 292 aaPredicted RBP13.01□□□□□ -0.33
CHD4-203ENST00000535717 ADGRD2Q7Z7M1 963 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 USP37Q86T82 979 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 MICALL1Q8N3F8 863 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 SUSD3Q96L08 255 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 TTPALQ9BTX7 342 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 NSUN3Q9H649 340 aaKnown RBP13.01□□□□□ -0.33
CHD4-203ENST00000535717 ARMCX3Q9UH62 379 aaPredicted RBP13.01□□□□□ -0.33
CHD4-203ENST00000535717 IRAK3Q9Y616 596 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 COL6A3P12111 3177 aa13.01□□□□□ -0.33
CHD4-203ENST00000535717 VWA8A3KMH1 1905 aa13□□□□□ -0.33
CHD4-203ENST00000535717 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13□□□□□ -0.33
CHD4-203ENST00000535717 SYCE3A1L190 88 aa13□□□□□ -0.33
CHD4-203ENST00000535717 M0QZQ0 153 aa13□□□□□ -0.33
CHD4-203ENST00000535717 LETM1O95202 739 aaPredicted RBP13□□□□□ -0.33
CHD4-203ENST00000535717 URODP06132 367 aa13□□□□□ -0.33
CHD4-203ENST00000535717 PAX3P23760 479 aa13□□□□□ -0.33
CHD4-203ENST00000535717 TKTP29401 623 aaKnown RBP13□□□□□ -0.33
CHD4-203ENST00000535717 CA8P35219 290 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms