RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 PLXDC1Q8IUK5 500 aa4.59□□□□□ -1.67
USP48-215ENST00000534705 FAM9AQ8IZU1 332 aaPredicted RBP4.59□□□□□ -1.67
USP48-215ENST00000534705 BEND2Q8NDZ0 799 aa4.59□□□□□ -1.67
USP48-215ENST00000534705 OR2I1PQ8NGU4 316 aa4.59□□□□□ -1.67
USP48-215ENST00000534705 NRG4Q8WWG1 115 aa4.59□□□□□ -1.67
USP48-215ENST00000534705 HDAC10Q969S8 669 aa4.59□□□□□ -1.67
USP48-215ENST00000534705 FAM193BQ96PV7 902 aaPredicted RBP4.59□□□□□ -1.67
USP48-215ENST00000534705 MYO5CQ9NQX4 1742 aa4.59□□□□□ -1.67
USP48-215ENST00000534705 AJAP1Q9UKB5 411 aaPredicted RBP4.59□□□□□ -1.67
USP48-215ENST00000534705 SORCS3Q9UPU3 1222 aa4.59□□□□□ -1.67
USP48-215ENST00000534705 DNM3Q9UQ16 869 aa4.59□□□□□ -1.67
USP48-215ENST00000534705 RICTORQ6R327 1708 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 HECW1Q76N89 1606 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 TTC37Q6PGP7 1564 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 WDR7Q9Y4E6 1490 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 SPATA31D3P0C874 917 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 ALAS1P13196 640 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 ATP5JP18859 108 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 RECQLP46063 649 aaPredicted RBP4.58□□□□□ -1.68
USP48-215ENST00000534705 ALDH1A3P47895 512 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 AVPR1BP47901 424 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 ANAPC15P60006 121 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 CDC42EP1Q00587 391 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 PCBP2Q15366 365 aaKnown RBP eCLIP4.58□□□□□ -1.68
USP48-215ENST00000534705 ATP2B3Q16720 1220 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 PTPN21Q16825 1174 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 ATXN7L2Q5T6C5 722 aaPredicted RBP4.58□□□□□ -1.68
USP48-215ENST00000534705 EFCAB2Q5VUJ9 269 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 SPATA31D4Q6ZUB0 917 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 GDF7Q7Z4P5 450 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 PNMA8AQ86V59 439 aaPredicted RBP4.58□□□□□ -1.68
USP48-215ENST00000534705 SYT12Q8IV01 421 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 SLC35B2Q8TB61 432 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 CPT1CQ8TCG5 803 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 CHMP4CQ96CF2 233 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 SLC2A13Q96QE2 648 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 SPON1Q9HCB6 807 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.58□□□□□ -1.68
USP48-215ENST00000534705 EIF2B4Q9UI10 523 aaKnown RBP4.58□□□□□ -1.68
USP48-215ENST00000534705 IPPQ9Y573 584 aa4.58□□□□□ -1.68
USP48-215ENST00000534705 CFAP20Q9Y6A4 193 aaKnown RBP4.58□□□□□ -1.68
USP48-215ENST00000534705 MARCH11A6NNE9 402 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 AHRRA9YTQ3 701 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 RNASET2O00584 256 aaKnown RBP4.57□□□□□ -1.68
USP48-215ENST00000534705 SCAF4O95104 1147 aaKnown RBP4.57□□□□□ -1.68
USP48-215ENST00000534705 AMY1AP04745 511 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 PCSK1P29120 753 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 APOBEC3AP31941 199 aaPredicted RBP4.57□□□□□ -1.68
USP48-215ENST00000534705 ELLP55199 621 aaPredicted RBP4.57□□□□□ -1.68
USP48-215ENST00000534705 NHLH2Q02577 135 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 DACT2Q5SW24 774 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 FAM102AQ5T9C2 384 aaPredicted RBP4.57□□□□□ -1.68
USP48-215ENST00000534705 AGAP9Q5VTM2 703 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 PPP4R3AQ6IN85 833 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.57□□□□□ -1.68
USP48-215ENST00000534705 ARMC6Q6NXE6 501 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 Q6YL49 198 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 RHOT2Q8IXI1 618 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 RNF169Q8NCN4 708 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 COA7Q96BR5 231 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 MYEOVQ96EZ4 313 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 MRI1Q9BV20 369 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 R3HDMLQ9H3Y0 253 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 TCF7L1Q9HCS4 588 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 INTUQ9ULD6 942 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 KIF14Q15058 1648 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 FRMPD1Q5SYB0 1578 aa4.57□□□□□ -1.68
USP48-215ENST00000534705 CDK13Q14004 1512 aaKnown RBP4.56□□□□□ -1.68
USP48-215ENST00000534705 PNPLA7Q6ZV29 1317 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 SIGLEC1Q9BZZ2 1709 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 DRGXA6NNA5 263 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 LEFTY2O00292 366 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 WNT10BO00744 389 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 HTRA2O43464 458 aaPredicted RBP4.56□□□□□ -1.68
USP48-215ENST00000534705 C1RP00736 705 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 POMCP01189 267 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 RPLP2P05387 115 aaKnown RBP4.56□□□□□ -1.68
USP48-215ENST00000534705 RAP2AP10114 183 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 DDCP20711 480 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 FPR1P21462 350 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 ZEB1P37275 1124 aaPredicted RBP4.56□□□□□ -1.68
USP48-215ENST00000534705 NEK2P51955 445 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 CTXN1P60606 82 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 RAB39AQ14964 217 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 METRNLQ641Q3 311 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 LCORLQ8N3X6 602 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 PPM1NQ8N819 430 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 SMAD5Q99717 465 aaKnown RBP4.56□□□□□ -1.68
USP48-215ENST00000534705 REXO4Q9GZR2 422 aaKnown RBP4.56□□□□□ -1.68
USP48-215ENST00000534705 LDAHQ9H6V9 325 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 RSAD1Q9HA92 442 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 TDP1Q9NUW8 608 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 CALCOCO1Q9P1Z2 691 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 POGKQ9P215 609 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 SLC23A1Q9UHI7 598 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 ACTL7AQ9Y615 435 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 MAGI3Q5TCQ9 1506 aa4.56□□□□□ -1.68
USP48-215ENST00000534705 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.56□□□□□ -1.68
USP48-215ENST00000534705 MYBBP1AQ9BQG0 1328 aaKnown RBP4.55□□□□□ -1.68
USP48-215ENST00000534705 TMEM200CA6NKL6 621 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms