RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 C1QTNF3-AMACRE9PGA6 284 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 SLC26A4O43511 780 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 NCK2O43639 380 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 SGTAO43765 313 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 ARIH2O95376 493 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 LTA4HP09960 611 aaKnown RBP3.94□□□□□ -1.78
CD44-229ENST00000528672 PTPN7P35236 360 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 IL6STP40189 918 aaPredicted RBP3.94□□□□□ -1.78
CD44-229ENST00000528672 GRK6P43250 576 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 MEOX1P50221 254 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 MAPK10P53779 464 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 PLP2Q04941 152 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 ZNF543Q08ER8 600 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 DUSP8Q13202 625 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 NOGQ13253 232 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 MST1LQ2TV78 715 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 TUBB8Q3ZCM7 444 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 GJC2Q5T442 439 aaPredicted RBP3.94□□□□□ -1.78
CD44-229ENST00000528672 CLEC4GQ6UXB4 293 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 TAS1R1Q7RTX1 841 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 RNF169Q8NCN4 708 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 DNERQ8NFT8 737 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 NSUN6Q8TEA1 469 aaKnown RBP3.94□□□□□ -1.78
CD44-229ENST00000528672 GCDHQ92947 438 aaPredicted RBP3.94□□□□□ -1.78
CD44-229ENST00000528672 ARL8AQ96BM9 186 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 NEIL1Q96FI4 390 aaPredicted RBP3.94□□□□□ -1.78
CD44-229ENST00000528672 SLC35A4Q96G79 324 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 CLPTM1LQ96KA5 538 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 FAM167AQ96KS9 214 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 SENP7Q9BQF6 1050 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 OR10A2Q9H208 303 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 C12orf65Q9H3J6 166 aaKnown RBP3.94□□□□□ -1.78
CD44-229ENST00000528672 C14orf93Q9H972 538 aaKnown RBP3.94□□□□□ -1.78
CD44-229ENST00000528672 ZMAT3Q9HA38 289 aaKnown RBP3.94□□□□□ -1.78
CD44-229ENST00000528672 ATP6V0A4Q9HBG4 840 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 ZNF287Q9HBT7 754 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 JADE2Q9NQC1 790 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 LMBRD1Q9NUN5 540 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 TDP1Q9NUW8 608 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 C9orf78Q9NZ63 289 aaPredicted RBP3.94□□□□□ -1.78
CD44-229ENST00000528672 VSX1Q9NZR4 365 aaPredicted RBP3.94□□□□□ -1.78
CD44-229ENST00000528672 ZNF69Q9UC07 566 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 SLC23A1Q9UHI7 598 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 OGDHLQ9ULD0 1010 aa3.94□□□□□ -1.78
CD44-229ENST00000528672 TCRBV7S2A1N4TA0A589 114 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 POM121BA6NF01 834 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 PATE3B3GLJ2 98 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 ARHGAP6O43182 974 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 FOXS1O43638 330 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 TLR5O60602 858 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 AHSGP02765 367 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 SLC6A2P23975 617 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 SLC7A1P30825 629 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 TECP42680 631 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 MAGEA10P43363 369 aaPredicted RBP3.93□□□□□ -1.78
CD44-229ENST00000528672 NKX6-1P78426 367 aaPredicted RBP3.93□□□□□ -1.78
CD44-229ENST00000528672 ATP8B2P98198 1209 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 CDC42EP1Q00587 391 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 SNAPC2Q13487 334 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 RIN1Q13671 783 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 MAPRE1Q15691 268 aaKnown RBP3.93□□□□□ -1.78
CD44-229ENST00000528672 GLIPR1L2Q4G1C9 344 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 KHDC1Q4VXA5 237 aaKnown RBP3.93□□□□□ -1.78
CD44-229ENST00000528672 PGBD2Q6P3X8 592 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 LDHAL6AQ6ZMR3 332 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 MMS22LQ6ZRQ5 1243 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 UBE3BQ7Z3V4 1068 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 HEATR3Q7Z4Q2 680 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 RSPH3Q86UC2 560 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 TAX1BP1Q86VP1 789 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 CIR1Q86X95 450 aaPredicted RBP3.93□□□□□ -1.78
CD44-229ENST00000528672 ELOA2Q8IYF1 753 aaPredicted RBP3.93□□□□□ -1.78
CD44-229ENST00000528672 CCDC33Q8N5R6 958 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 MYCT1Q8N699 235 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.93□□□□□ -1.78
CD44-229ENST00000528672 IL31RAQ8NI17 732 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 BRI3BPQ8WY22 251 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 ANKS1AQ92625 1134 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 TMX3Q96JJ7 454 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 LSM14BQ9BX40 385 aaKnown RBP3.93□□□□□ -1.78
CD44-229ENST00000528672 PLA2G12BQ9BX93 195 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 TEX101Q9BY14 249 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 CPEB1Q9BZB8 566 aaKnown RBP3.93□□□□□ -1.78
CD44-229ENST00000528672 UNKQ9C0B0 810 aaKnown RBP3.93□□□□□ -1.78
CD44-229ENST00000528672 ENKD1Q9H0I2 346 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 MYLK2Q9H1R3 596 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 MANSC1Q9H8J5 431 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 PNPLA8Q9NP80 782 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 PNPOQ9NVS9 261 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 SMPD4Q9NXE4 827 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 GPRC5DQ9NZD1 345 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 PPP4R1LQ9P1A2 415 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 MAGED2Q9UNF1 606 aaPredicted RBP3.93□□□□□ -1.78
CD44-229ENST00000528672 CEP83Q9Y592 693 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 PCDHGB3Q9Y5G1 929 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 ZNF536O15090 1300 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 RPTORQ8N122 1335 aa3.93□□□□□ -1.78
CD44-229ENST00000528672 MYBBP1AQ9BQG0 1328 aaKnown RBP3.93□□□□□ -1.78
CD44-229ENST00000528672 A0A087WV62 115 aa3.92□□□□□ -1.78
CD44-229ENST00000528672 NPEPPSL1A6NEC2 478 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms