RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 XPOTO43592 962 aaKnown RBP22.57■■□□□ 1.2
VPS28-208ENST00000527797 KRT5P13647 590 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 KCNE1P15382 129 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 POLR2BP30876 1174 aaKnown RBP22.57■■□□□ 1.2
VPS28-208ENST00000527797 ATN1P54259 1190 aaPredicted RBP22.57■■□□□ 1.2
VPS28-208ENST00000527797 NYAP1Q6ZVC0 841 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 FAXDC2Q96IV6 333 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 PCDHA13Q9Y5I0 950 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 PCNTO95613 3336 aa22.57■■□□□ 1.2
VPS28-208ENST00000527797 A0A087X0T9 212 aa22.56■■□□□ 1.2
VPS28-208ENST00000527797 PQBP1O60828 265 aaKnown RBP22.56■■□□□ 1.2
VPS28-208ENST00000527797 FAM228BP0C875 321 aa22.56■■□□□ 1.2
VPS28-208ENST00000527797 GUCY2FP51841 1108 aa22.56■■□□□ 1.2
VPS28-208ENST00000527797 BMS1Q14692 1282 aaKnown RBP22.56■■□□□ 1.2
VPS28-208ENST00000527797 ARHGAP29Q52LW3 1261 aa22.56■■□□□ 1.2
VPS28-208ENST00000527797 ZNF667Q5HYK9 610 aa22.56■■□□□ 1.2
VPS28-208ENST00000527797 GLRA4Q5JXX5 417 aa22.56■■□□□ 1.2
VPS28-208ENST00000527797 DNTTIP2Q5QJE6 756 aaKnown RBP22.56■■□□□ 1.2
VPS28-208ENST00000527797 MRPL10Q7Z7H8 261 aaKnown RBP22.56■■□□□ 1.2
VPS28-208ENST00000527797 ADAM2Q99965 735 aa22.56■■□□□ 1.2
VPS28-208ENST00000527797 IFIH1Q9BYX4 1025 aaKnown RBP22.56■■□□□ 1.2
VPS28-208ENST00000527797 LUC7LQ9NQ29 371 aaKnown RBP22.56■■□□□ 1.2
VPS28-208ENST00000527797 LZTFL1Q9NQ48 299 aa22.56■■□□□ 1.2
VPS28-208ENST00000527797 MGEA5O60502 916 aa22.55■■□□□ 1.2
VPS28-208ENST00000527797 ZNF623O75123 536 aa22.55■■□□□ 1.2
VPS28-208ENST00000527797 SKIP12755 728 aa22.55■■□□□ 1.2
VPS28-208ENST00000527797 ACO1P21399 889 aaKnown RBP22.55■■□□□ 1.2
VPS28-208ENST00000527797 TNFAIP3P21580 790 aa22.55■■□□□ 1.2
VPS28-208ENST00000527797 MAGEA1P43355 309 aa22.55■■□□□ 1.2
VPS28-208ENST00000527797 GJA8P48165 433 aa22.55■■□□□ 1.2
VPS28-208ENST00000527797 VAV2P52735 878 aa22.55■■□□□ 1.2
VPS28-208ENST00000527797 MBTPS1Q14703 1052 aa22.55■■□□□ 1.2
VPS28-208ENST00000527797 ANKRD33Q7Z3H0 272 aa22.55■■□□□ 1.2
VPS28-208ENST00000527797 TXLNBQ8N3L3 684 aa22.55■■□□□ 1.2
VPS28-208ENST00000527797 AGPAT1Q99943 283 aa22.55■■□□□ 1.2
VPS28-208ENST00000527797 VRTNQ9H8Y1 702 aa22.55■■□□□ 1.2
VPS28-208ENST00000527797 PCDHB4Q9Y5E5 795 aa22.55■■□□□ 1.2
VPS28-208ENST00000527797 ANK1P16157 1881 aa22.55■■□□□ 1.2
VPS28-208ENST00000527797 KIF2AO00139 706 aaPredicted RBP22.54■■□□□ 1.2
VPS28-208ENST00000527797 BPIFB4P59827 614 aa22.54■■□□□ 1.2
VPS28-208ENST00000527797 WDR72Q3MJ13 1102 aa22.54■■□□□ 1.2
VPS28-208ENST00000527797 SMYD5Q6GMV2 418 aa22.54■■□□□ 1.2
VPS28-208ENST00000527797 TMEM130Q8N3G9 435 aa22.54■■□□□ 1.2
VPS28-208ENST00000527797 ANKLE1Q8NAG6 615 aa22.54■■□□□ 1.2
VPS28-208ENST00000527797 C18orf25Q96B23 403 aaPredicted RBP22.54■■□□□ 1.2
VPS28-208ENST00000527797 HPDLQ96IR7 371 aa22.54■■□□□ 1.2
VPS28-208ENST00000527797 SYT11Q9BT88 431 aa22.54■■□□□ 1.2
VPS28-208ENST00000527797 NXF1Q9UBU9 619 aaKnown RBP22.54■■□□□ 1.2
VPS28-208ENST00000527797 A0A0U1RQF3 1178 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 A0A0U1RQJ8 604 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 DCDC2CA8MYV0 355 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 PITPNM1O00562 1244 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 STAU1O95793 577 aaKnown RBP22.53■■□□□ 1.2
VPS28-208ENST00000527797 TUBB4AP04350 444 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 P4HA1P13674 534 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 TNNT1P13805 278 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 YWHAEP62258 255 aaKnown RBP22.53■■□□□ 1.2
VPS28-208ENST00000527797 MYO1EQ12965 1108 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 C10orf76Q5T2E6 689 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 ZNF662Q6ZS27 426 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 ATRIPQ8WXE1 791 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 PGBD4Q96DM1 585 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 TUBGCP4Q9UGJ1 667 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 CNTN6Q9UQ52 1028 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 GIT1Q9Y2X7 761 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 DDX3XO00571 662 aaKnown RBP eCLIP22.53■■□□□ 1.26e-7■■□□□ 12.4
VPS28-208ENST00000527797 COL6A1P12109 1028 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 CYP11B1P15538 503 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 CYP3A5P20815 502 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 ARHGAP25P42331 645 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 ASPAP45381 313 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 PDE6CP51160 858 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 C1orf53Q5VUE5 145 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 SLC47A2Q86VL8 602 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 GLYCTKQ8IVS8 523 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 UBR7Q8N806 425 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 SLC30A5Q8TAD4 765 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 EPS8L1Q8TE68 723 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 TOX2Q96NM4 488 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 TSGA10Q9BZW7 698 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 RNF19AQ9NV58 838 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 NAGPAQ9UK23 515 aa22.53■■□□□ 1.2
VPS28-208ENST00000527797 KRT86O43790 486 aa22.52■■□□□ 1.2
VPS28-208ENST00000527797 KIF5AQ12840 1032 aa22.52■■□□□ 1.2
VPS28-208ENST00000527797 CCDC122Q5T0U0 273 aa22.52■■□□□ 1.2
VPS28-208ENST00000527797 ALKBH5Q6P6C2 394 aaKnown RBP22.52■■□□□ 1.2
VPS28-208ENST00000527797 TMEM270Q6UE05 265 aa22.52■■□□□ 1.2
VPS28-208ENST00000527797 NOP9Q86U38 636 aaKnown RBP22.52■■□□□ 1.2
VPS28-208ENST00000527797 RPUSD2Q8IZ73 545 aaKnown RBP22.52■■□□□ 1.2
VPS28-208ENST00000527797 LNX1Q8TBB1 728 aaPredicted RBP22.52■■□□□ 1.2
VPS28-208ENST00000527797 DIS3LQ8TF46 1054 aaKnown RBP22.52■■□□□ 1.2
VPS28-208ENST00000527797 SLC20A1Q8WUM9 679 aa22.52■■□□□ 1.2
VPS28-208ENST00000527797 LPPQ93052 612 aa22.52■■□□□ 1.2
VPS28-208ENST00000527797 RPS6KC1Q96S38 1066 aa22.52■■□□□ 1.2
VPS28-208ENST00000527797 RGS18Q9NS28 235 aa22.52■■□□□ 1.2
VPS28-208ENST00000527797 SEPT11Q9NVA2 429 aaKnown RBP22.52■■□□□ 1.2
VPS28-208ENST00000527797 NOCTQ9UK39 431 aaKnown RBP22.52■■□□□ 1.2
VPS28-208ENST00000527797 POLIQ9UNA4 740 aa22.52■■□□□ 1.2
VPS28-208ENST00000527797 MEIS3P2A8K0S8 358 aa22.51■■□□□ 1.19
VPS28-208ENST00000527797 ATF7P17544 494 aaPredicted RBP22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms