RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 IVDP26440 423 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 ATP5DP30049 168 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 GNA15P30679 374 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 ARL2P36404 184 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 NOMO3P69849 1222 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 BBOF1Q8ND07 529 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 FAM84AQ96KN4 292 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 TRAIPQ9BWF2 469 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 A0A0B4J269 797 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 GOLGA6L7A0A1B0GV03 622 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 ASAP2O43150 1006 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 ATF2P15336 505 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 C1QBPQ07021 282 aaKnown RBP22.6■■□□□ 1.21
VPS28-205ENST00000526204 MAMLD1Q13495 774 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 LLGL1Q15334 1064 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 CCNG2Q16589 344 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 SPOPLQ6IQ16 392 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 TMEM270Q6UE05 265 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 KATNAL2Q8IYT4 538 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 ASAP3Q8TDY4 903 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 MSTO1Q9BUK6 570 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 NIFKQ9BYG3 293 aaKnown RBP22.6■■□□□ 1.21
VPS28-205ENST00000526204 AAASQ9NRG9 546 aa22.6■■□□□ 1.21
VPS28-205ENST00000526204 PTPRJQ12913 1337 aa22.59■■□□□ 1.21
VPS28-205ENST00000526204 UMODL1Q5DID0 1318 aa22.59■■□□□ 1.21
VPS28-205ENST00000526204 NFKBIEO00221 500 aa22.59■■□□□ 1.21
VPS28-205ENST00000526204 CLTAP09496 248 aa22.59■■□□□ 1.21
VPS28-205ENST00000526204 SLCO1A2P46721 670 aa22.59■■□□□ 1.21
VPS28-205ENST00000526204 WNT7BP56706 349 aa22.59■■□□□ 1.21
VPS28-205ENST00000526204 SP2Q02086 613 aa22.59■■□□□ 1.21
VPS28-205ENST00000526204 KLF1Q13351 362 aaPredicted RBP22.59■■□□□ 1.21
VPS28-205ENST00000526204 UBAP2Q5T6F2 1119 aaKnown RBP22.59■■□□□ 1.21
VPS28-205ENST00000526204 FBXW10Q5XX13 1052 aa22.59■■□□□ 1.21
VPS28-205ENST00000526204 PLEKHA7Q6IQ23 1121 aa22.59■■□□□ 1.21
VPS28-205ENST00000526204 CCDC50Q8IVM0 306 aa22.59■■□□□ 1.21
VPS28-205ENST00000526204 SUGP1Q8IWZ8 645 aaKnown RBP22.59■■□□□ 1.21
VPS28-205ENST00000526204 ATG4AQ8WYN0 398 aa22.59■■□□□ 1.21
VPS28-205ENST00000526204 TMEM134Q9H6X4 195 aa22.59■■□□□ 1.21
VPS28-205ENST00000526204 APOBEC3GQ9HC16 384 aaKnown RBP22.59■■□□□ 1.21
VPS28-205ENST00000526204 PHIPQ8WWQ0 1821 aa22.59■■□□□ 1.21
VPS28-205ENST00000526204 ZNFX1Q9P2E3 1918 aaKnown RBP22.58■■□□□ 1.21
VPS28-205ENST00000526204 SORBS3O60504 671 aa22.58■■□□□ 1.21
VPS28-205ENST00000526204 TTC4O95801 387 aa22.58■■□□□ 1.21
VPS28-205ENST00000526204 RFC5P40937 340 aa22.58■■□□□ 1.21
VPS28-205ENST00000526204 PHLDB2Q86SQ0 1253 aa22.58■■□□□ 1.21
VPS28-205ENST00000526204 ANKS4BQ8N8V4 417 aa22.58■■□□□ 1.21
VPS28-205ENST00000526204 EXD1Q8NHP7 514 aa22.58■■□□□ 1.21
VPS28-205ENST00000526204 SCLT1Q96NL6 688 aa22.58■■□□□ 1.21
VPS28-205ENST00000526204 C11orf70Q9BRQ4 267 aa22.58■■□□□ 1.21
VPS28-205ENST00000526204 HAPLN2Q9GZV7 340 aa22.58■■□□□ 1.21
VPS28-205ENST00000526204 ANAPC5Q9UJX4 755 aa22.58■■□□□ 1.21
VPS28-205ENST00000526204 RLFQ13129 1914 aa22.58■■□□□ 1.21
VPS28-205ENST00000526204 RALAP11233 206 aa22.58■■□□□ 1.2
VPS28-205ENST00000526204 ADCY8P40145 1251 aa22.58■■□□□ 1.2
VPS28-205ENST00000526204 CETN2P41208 172 aa22.58■■□□□ 1.2
VPS28-205ENST00000526204 CCDC13Q8IYE1 715 aa22.58■■□□□ 1.2
VPS28-205ENST00000526204 CCDC89Q8N998 374 aa22.58■■□□□ 1.2
VPS28-205ENST00000526204 RBBP8NLQ8NC74 664 aaPredicted RBP22.58■■□□□ 1.2
VPS28-205ENST00000526204 ZBTB45Q96K62 511 aaPredicted RBP22.58■■□□□ 1.2
VPS28-205ENST00000526204 CCDC114Q96M63 670 aa22.58■■□□□ 1.2
VPS28-205ENST00000526204 PARVAQ9NVD7 372 aa22.58■■□□□ 1.2
VPS28-205ENST00000526204 WDR81Q562E7 1941 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 AP3M2P53677 418 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 ITGA8P53708 1063 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 NOP14P78316 857 aaKnown RBP22.57■■□□□ 1.2
VPS28-205ENST00000526204 LACTB2Q53H82 288 aaPredicted RBP22.57■■□□□ 1.2
VPS28-205ENST00000526204 APOBEC3FQ8IUX4 373 aaKnown RBP22.57■■□□□ 1.2
VPS28-205ENST00000526204 CCDC197Q8NCU1 140 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 CHST13Q8NET6 341 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 HERPUD2Q9BSE4 406 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 DDX23Q9BUQ8 820 aaKnown RBP22.57■■□□□ 1.2
VPS28-205ENST00000526204 TARS2Q9BW92 718 aaKnown RBP22.57■■□□□ 1.2
VPS28-205ENST00000526204 OSBPL7Q9BZF2 842 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 IMPG2Q9BZV3 1241 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 ANKFY1Q9P2R3 1169 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 FBXO40Q9UH90 709 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 ADGRA2Q96PE1 1338 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 ZNF541Q9H0D2 1346 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 KIAA1217Q5T5P2 1943 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 IGKV6D-21A0A0A0MT36 114 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 ACSL3O95573 720 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 HNRNPH1P31943 449 aaKnown RBP22.57■■□□□ 1.2
VPS28-205ENST00000526204 C2CD6Q53TS8 623 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 ZNF365Q70YC5 407 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 TAX1BP1Q86VP1 789 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 OSBPL8Q9BZF1 889 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 KDM4CQ9H3R0 1056 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 GJA3Q9Y6H8 435 aa22.57■■□□□ 1.2
VPS28-205ENST00000526204 CNTNAP2Q9UHC6 1331 aa22.56■■□□□ 1.2
VPS28-205ENST00000526204 SPDYE16A6NNV3 312 aaPredicted RBP22.56■■□□□ 1.2
VPS28-205ENST00000526204 THAP12O43422 761 aa22.56■■□□□ 1.2
VPS28-205ENST00000526204 TCEA3O75764 348 aa22.56■■□□□ 1.2
VPS28-205ENST00000526204 LMNB2Q03252 620 aa22.56■■□□□ 1.2
VPS28-205ENST00000526204 NCOA4Q13772 614 aa22.56■■□□□ 1.2
VPS28-205ENST00000526204 LLGL2Q6P1M3 1020 aa22.56■■□□□ 1.2
VPS28-205ENST00000526204 PASD1Q8IV76 773 aa22.56■■□□□ 1.2
VPS28-205ENST00000526204 NRBP2Q9NSY0 501 aa22.56■■□□□ 1.2
VPS28-205ENST00000526204 R3HDM2Q9Y2K5 976 aaKnown RBP22.56■■□□□ 1.2
VPS28-205ENST00000526204 NEU2Q9Y3R4 380 aa22.56■■□□□ 1.2
VPS28-205ENST00000526204 COL11A1P12107 1806 aaPredicted RBP22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms