RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 PNPLA4P41247 253 aa15.42■□□□□ 0.06
NUP54-216ENST00000514901 SKIV2LQ15477 1246 aaKnown RBP15.42■□□□□ 0.06
NUP54-216ENST00000514901 PTPN14Q15678 1187 aa15.42■□□□□ 0.06
NUP54-216ENST00000514901 DUSP6Q16828 381 aa15.42■□□□□ 0.06
NUP54-216ENST00000514901 PPFIBP1Q86W92 1011 aa15.42■□□□□ 0.06
NUP54-216ENST00000514901 MLKLQ8NB16 471 aa15.42■□□□□ 0.06
NUP54-216ENST00000514901 C3orf58Q8NDZ4 430 aa15.42■□□□□ 0.06
NUP54-216ENST00000514901 TMC2Q8TDI7 906 aa15.42■□□□□ 0.06
NUP54-216ENST00000514901 CCDC127Q96BQ5 260 aa15.42■□□□□ 0.06
NUP54-216ENST00000514901 SUSD3Q96L08 255 aa15.42■□□□□ 0.06
NUP54-216ENST00000514901 MKNK1Q9BUB5 465 aa15.42■□□□□ 0.06
NUP54-216ENST00000514901 COG5Q9UP83 839 aa15.42■□□□□ 0.06
NUP54-216ENST00000514901 HIDE1A8MVS5 230 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 C1RP00736 705 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 DLATP10515 647 aaKnown RBP15.41■□□□□ 0.06
NUP54-216ENST00000514901 KRT13P13646 458 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 FGFR3P22607 806 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 NRIP1P48552 1158 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 AARSP49588 968 aaKnown RBP eCLIP15.41■□□□□ 0.06
NUP54-216ENST00000514901 GUCY2FP51841 1108 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 WNT7BP56706 349 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 LILRA4P59901 499 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 RBP5P82980 135 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 HYAL1Q12794 435 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 COL19A1Q14993 1142 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 ANKRD40Q6AI12 368 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 INTS8Q75QN2 995 aaKnown RBP15.41■□□□□ 0.06
NUP54-216ENST00000514901 CSGALNACT2Q8N6G5 542 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 EFHBQ8N7U6 833 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 APPL2Q8NEU8 664 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 PARD3BQ8TEW8 1205 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 NELFBQ8WX92 580 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 RIN2Q8WYP3 895 aaPredicted RBP15.41■□□□□ 0.06
NUP54-216ENST00000514901 PIK3R5Q8WYR1 880 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 ZNF560Q96MR9 790 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 CGRRF1Q99675 332 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 RXFP1Q9HBX9 757 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 FNIP2Q9P278 1114 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 PCDHGC5Q9Y5F6 944 aa15.41■□□□□ 0.06
NUP54-216ENST00000514901 M0QZQ0 153 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 C2CD2LO14523 706 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 IKBKBO14920 756 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 AKAP3O75969 853 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 SLC34A2O95436 690 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 SRGAP2BP0DMP2 458 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 EPB41P11171 864 aaKnown RBP15.4■□□□□ 0.06
NUP54-216ENST00000514901 CD44P16070 742 aaKnown RBP15.4■□□□□ 0.06
NUP54-216ENST00000514901 BRCC3P46736 316 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 CASP4P49662 377 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 TAF6P49848 677 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 CLDN10P78369 228 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 PAK1Q13153 545 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 KLHL10Q6JEL2 608 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 DSTYKQ6XUX3 929 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 ANKS3Q6ZW76 656 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 ADGRD2Q7Z7M1 963 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 RBM23Q86U06 439 aaKnown RBP15.4■□□□□ 0.06
NUP54-216ENST00000514901 CEP57Q86XR8 500 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 ZC3H3Q8IXZ2 948 aaKnown RBP15.4■□□□□ 0.06
NUP54-216ENST00000514901 FAM186BQ8IYM0 893 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 LRRC52Q8N7C0 313 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 C1orf127Q8N9H9 656 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 AUTS2Q8WXX7 1259 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 HLA-CQ95604 372 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 PABPC5Q96DU9 382 aaKnown RBP15.4■□□□□ 0.06
NUP54-216ENST00000514901 CEP63Q96MT8 703 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 MTMR12Q9C0I1 747 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 IGFLR1Q9H665 355 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 DACH1Q9UI36 760 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 PCDHB8Q9UN66 801 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 AGAP1Q9UPQ3 857 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 PRUNE2Q8WUY3 3088 aa15.4■□□□□ 0.06
NUP54-216ENST00000514901 H7C4K7 107 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 PER2O15055 1255 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 SLC16A3O15427 465 aaKnown RBP15.39■□□□□ 0.05
NUP54-216ENST00000514901 CLASP2O75122 1294 aaKnown RBP15.39■□□□□ 0.05
NUP54-216ENST00000514901 FGFR1OPO95684 399 aaKnown RBP15.39■□□□□ 0.05
NUP54-216ENST00000514901 ITGB3P05106 788 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 ADH1AP07327 375 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 CNPP09543 421 aaKnown RBP15.39■□□□□ 0.05
NUP54-216ENST00000514901 IGFBP6P24592 240 aaPredicted RBP15.39■□□□□ 0.05
NUP54-216ENST00000514901 KLRC2P26717 231 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 VAMP7P51809 220 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 MCCD1P59942 119 aaPredicted RBP15.39■□□□□ 0.05
NUP54-216ENST00000514901 MYO1EQ12965 1108 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 ADAM15Q13444 863 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 CTC1Q2NKJ3 1217 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 SV2CQ496J9 727 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 CT47A1Q5JQC4 288 aaPredicted RBP15.39■□□□□ 0.05
NUP54-216ENST00000514901 RTP2Q5QGT7 225 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 CCDC183Q5T5S1 534 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 TMEM184AQ6ZMB5 413 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 RBM43Q6ZSC3 357 aaKnown RBP15.39■□□□□ 0.05
NUP54-216ENST00000514901 TRAPPC11Q7Z392 1133 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 OR5B17Q8NGF7 314 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 LNX1Q8TBB1 728 aaPredicted RBP15.39■□□□□ 0.05
NUP54-216ENST00000514901 KLHL5Q96PQ7 755 aa15.39■□□□□ 0.05
NUP54-216ENST00000514901 POP1Q99575 1024 aaKnown RBP15.39■□□□□ 0.05
NUP54-216ENST00000514901 OXCT2Q9BYC2 517 aaPredicted RBP15.39■□□□□ 0.05
NUP54-216ENST00000514901 DSEQ9UL01 958 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms