RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 GNGT2O14610 69 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 MYL3P08590 195 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 KRT10P13645 584 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 ANKRD20A4Q4UJ75 823 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 ANKRD20A8PQ5CZ79 823 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 ANKRD20A2Q5SQ80 823 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 ANKRD20A1Q5TYW2 823 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 KLC3Q6P597 504 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 RSBN1LQ6PCB5 846 aaPredicted RBP13.36□□□□□ -0.27
USP53-209ENST00000514665 SPATA18Q8TC71 538 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 FGD4Q96M96 766 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 UBN1Q9NPG3 1134 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 FAM49BQ9NUQ9 324 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 TBX20Q9UMR3 447 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 MAP3K6O95382 1288 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 PDGFRBP09619 1106 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 EEF1B2P24534 225 aaKnown RBP13.36□□□□□ -0.27
USP53-209ENST00000514665 SREBF1P36956 1147 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 TAP1Q03518 808 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 CYP4A22Q5TCH4 519 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 SYDE1Q6ZW31 735 aaPredicted RBP13.36□□□□□ -0.27
USP53-209ENST00000514665 KDELC2Q7Z4H8 507 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 ZNF280CQ8ND82 737 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 OR6P1Q8NGX9 317 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 SLC26A7Q8TE54 656 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 TSC22D3Q99576 134 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 BLOC1S4Q9NUP1 217 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 LMNAP02545 664 aaKnown RBP13.35□□□□□ -0.27
USP53-209ENST00000514665 BRD2P25440 801 aaKnown RBP13.35□□□□□ -0.27
USP53-209ENST00000514665 AP3M2P53677 418 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 ESRRGP62508 458 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 SGSM1Q2NKQ1 1148 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 KIF19Q2TAC6 998 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.35□□□□□ -0.27
USP53-209ENST00000514665 CDKL3Q8IVW4 592 aaPredicted RBP13.35□□□□□ -0.27
USP53-209ENST00000514665 ELMO3Q96BJ8 720 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 SGSM3Q96HU1 749 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 SMG5Q9UPR3 1016 aaKnown RBP13.35□□□□□ -0.27
USP53-209ENST00000514665 KPNA7A9QM74 516 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 CAND2O75155 1236 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 S100BP04271 92 aaPredicted RBP13.35□□□□□ -0.27
USP53-209ENST00000514665 GYS1P13807 737 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 PGM1P36871 562 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 EVX2Q03828 476 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 EFHC2Q5JST6 749 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 SH3RF1Q7Z6J0 888 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 TAS1R2Q8TE23 839 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 PPP1R36Q96LQ0 422 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 XPO7Q9UIA9 1087 aaKnown RBP13.35□□□□□ -0.27
USP53-209ENST00000514665 LCMT1Q9UIC8 334 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 RAB21Q9UL25 225 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.35□□□□□ -0.27
USP53-209ENST00000514665 F8VZ95 297 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 APOL1O14791 398 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 SLC26A4O43511 780 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 DRP2Q13474 957 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 TMEM259Q4ZIN3 620 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 FSCBQ5H9T9 825 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 SAMD7Q7Z3H4 446 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 C1orf131Q8NDD1 294 aaKnown RBP13.35□□□□□ -0.27
USP53-209ENST00000514665 ATP8B4Q8TF62 1192 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 RAPGEF5Q92565 580 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 DHX38Q92620 1227 aaKnown RBP13.35□□□□□ -0.27
USP53-209ENST00000514665 PGBD4Q96DM1 585 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 RMDN2Q96LZ7 410 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 ACAP3Q96P50 834 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 SLC4A9Q96Q91 983 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 MMP19Q99542 508 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 UPF3AQ9H1J1 476 aaKnown RBP13.35□□□□□ -0.27
USP53-209ENST00000514665 SUDS3Q9H7L9 328 aaPredicted RBP13.35□□□□□ -0.27
USP53-209ENST00000514665 ABCF3Q9NUQ8 709 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 IGSF9BQ9UPX0 1349 aa13.35□□□□□ -0.27
USP53-209ENST00000514665 MROH1Q8NDA8 1641 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 LRRC10BA6NIK2 292 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 P4HA2O15460 535 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 PFDN1O60925 122 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 ENO1P06733 434 aaKnown RBP13.34□□□□□ -0.27
USP53-209ENST00000514665 RRM1P23921 792 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 ALDH18A1P54886 795 aaKnown RBP13.34□□□□□ -0.27
USP53-209ENST00000514665 KDM7AQ6ZMT4 941 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 ZNF720Q7Z2F6 126 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 PDCD6IPQ8WUM4 868 aaKnown RBP13.34□□□□□ -0.27
USP53-209ENST00000514665 TSSK1BQ9BXA7 367 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 E2F8A0AVK6 867 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 RARBP10826 455 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 TMEM62Q0P6H9 643 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 PIGHQ14442 188 aaPredicted RBP13.34□□□□□ -0.27
USP53-209ENST00000514665 TKFCQ3LXA3 575 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 MEI1Q5TIA1 1274 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 ACAD11Q709F0 780 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 APOBEC3FQ8IUX4 373 aaKnown RBP13.34□□□□□ -0.27
USP53-209ENST00000514665 TRIML2Q8N7C3 387 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 CDC26Q8NHZ8 85 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 UBA3Q8TBC4 463 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 FEZF2Q8TBJ5 459 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 MRPL46Q9H2W6 279 aaKnown RBP13.34□□□□□ -0.27
USP53-209ENST00000514665 PSMC3IPQ9P2W1 217 aaPredicted RBP13.34□□□□□ -0.27
USP53-209ENST00000514665 KIAA0391O15091 583 aaKnown RBP13.34□□□□□ -0.27
USP53-209ENST00000514665 FAM153BP0C7A2 387 aa13.34□□□□□ -0.27
USP53-209ENST00000514665 FOXD4Q12950 439 aaPredicted RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms