RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	FXR1	P51114	621 aa	Known RBP eCLIP	5.51	□□□□□ -1.53	1e-6	■□□□□ 10.6
MATR3-223	ENST00000514402	SEC24C	P53992	1094 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	EVA1C	P58658	441 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	HSD11B2	P80365	405 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	EXOSC10	Q01780	885 aa	Known RBP	5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	TLE1	Q04724	770 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	SCAP	Q12770	1279 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	CYP2A13	Q16696	494 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	C3orf36	Q3SXR2	165 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	THEMIS2	Q5TEJ8	643 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	GADL1	Q6ZQY3	521 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	CMTR2	Q8IYT2	770 aa	Known RBP	5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	AOPEP	Q8N6M6	819 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	TBC1D15	Q8TC07	691 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	CAVIN3	Q969G5	261 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	RNF31	Q96EP0	1072 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	PACSIN1	Q9BY11	444 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	TBCCD1	Q9NVR7	557 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	POLH	Q9Y253	713 aa		5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	MTO1	Q9Y2Z2	717 aa	Known RBP	5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	EPN1	Q9Y6I3	576 aa	Predicted RBP	5.51	□□□□□ -1.53
MATR3-223	ENST00000514402	ANKRD62	A6NC57	917 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	SLC16A6	O15403	523 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	SLC43A1	O75387	559 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	SNUPN	O95149	360 aa	Known RBP	5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	ESRRB	O95718	433 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	FTH1P19	P0C7X4	201 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	VCAM1	P19320	739 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	VAV2	P52735	878 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	NOMO3	P69849	1222 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	SLFN5	Q08AF3	891 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	MPP3	Q13368	585 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	IL10RA	Q13651	578 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	ERCC6L	Q2NKX8	1250 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	UAP1L1	Q3KQV9	507 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	NOMO2	Q5JPE7	1267 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	SP5	Q6BEB4	398 aa	Predicted RBP	5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	ZNF365	Q70YC5	407 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	CHMP4C	Q96CF2	233 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	ZG16B	Q96DA0	208 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	MARS2	Q96GW9	593 aa	Known RBP	5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	CLPTM1L	Q96KA5	538 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	GNL3L	Q9NVN8	582 aa	Known RBP	5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	RLIM	Q9NVW2	624 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402	PCDHB1	Q9Y5F3	818 aa		5.5	□□□□□ -1.53
MATR3-223	ENST00000514402		A0A1W2PS29	197 aa		5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	PPFIA2	O75334	1257 aa		5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	ZRANB2	O95218	330 aa	Known RBP eCLIP	5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	CD1A	P06126	327 aa		5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	TYRP1	P17643	537 aa		5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	ODF1	Q14990	250 aa		5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	BRDT	Q58F21	947 aa	Predicted RBP	5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	GPR149	Q86SP6	731 aa		5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	PDSS2	Q86YH6	399 aa		5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	DMRTA2	Q96SC8	542 aa		5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	SMAD5	Q99717	465 aa	Known RBP	5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	TCF7L1	Q9HCS4	588 aa		5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	TES	Q9UGI8	421 aa	Known RBP	5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	USP25	Q9UHP3	1055 aa		5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	SERPINB13	Q9UIV8	391 aa		5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	DMTF1	Q9Y222	760 aa		5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	AATK	Q6ZMQ8	1374 aa		5.49	□□□□□ -1.53
MATR3-223	ENST00000514402	FCER1A	P12319	257 aa		5.48	□□□□□ -1.53
MATR3-223	ENST00000514402	SLC6A4	P31645	630 aa		5.48	□□□□□ -1.53
MATR3-223	ENST00000514402	CYP2C19	P33261	490 aa		5.48	□□□□□ -1.53
MATR3-223	ENST00000514402	ZNF280A	P59817	542 aa	Predicted RBP	5.48	□□□□□ -1.53
MATR3-223	ENST00000514402	DSC2	Q02487	901 aa		5.48	□□□□□ -1.53
MATR3-223	ENST00000514402	UTP14C	Q5TAP6	766 aa	Known RBP	5.48	□□□□□ -1.53
MATR3-223	ENST00000514402	ZBTB46	Q86UZ6	589 aa		5.48	□□□□□ -1.53
MATR3-223	ENST00000514402	DNAJC10	Q8IXB1	793 aa		5.48	□□□□□ -1.53
MATR3-223	ENST00000514402	LNX2	Q8N448	690 aa		5.48	□□□□□ -1.53
MATR3-223	ENST00000514402		Q8NA96	180 aa		5.48	□□□□□ -1.53
MATR3-223	ENST00000514402	NACC2	Q96BF6	587 aa		5.48	□□□□□ -1.53
MATR3-223	ENST00000514402	NUP88	Q99567	741 aa	Predicted RBP	5.48	□□□□□ -1.53
MATR3-223	ENST00000514402	UNKL	Q9H9P5	680 aa	Known RBP	5.48	□□□□□ -1.53
MATR3-223	ENST00000514402	HSFX1	Q9UBD0	423 aa		5.48	□□□□□ -1.53
MATR3-223	ENST00000514402		E7ENX8	843 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	OVOL3	O00110	214 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	AGFG2	O95081	481 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	KCNA2	P16389	499 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	MAL	P21145	153 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	AKAP5	P24588	427 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	NANOS3	P60323	173 aa	Known RBP	5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	POU6F2	P78424	691 aa	Predicted RBP	5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	TAP2	Q03519	686 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	PIGF	Q07326	219 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	ZNF844	Q08AG5	666 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	FOXI1	Q12951	378 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	OLFML1	Q6UWY5	402 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	CLNK	Q7Z7G1	428 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	PRIMA1	Q86XR5	153 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	PRR18	Q8N4B5	295 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	CPA6	Q8N4T0	437 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	C3orf20	Q8ND61	904 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	KAT5	Q92993	513 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	RAB24	Q969Q5	203 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	GPATCH3	Q96I76	525 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402		Q96MF0	132 aa		5.47	□□□□□ -1.53
MATR3-223	ENST00000514402	TRGV11	A0A075B6L2	103 aa		5.46	□□□□□ -1.54
MATR3-223	ENST00000514402	PRAMEF33	A0A0G2JMD5	474 aa		5.46	□□□□□ -1.54

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms