RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TCEA1P23193 301 aaKnown RBP12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 CIITAP33076 1130 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 NCKAP1LP55160 1127 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 RHBDL3P58872 404 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 ACTR3P61158 418 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 TRMT5Q32P41 509 aaKnown RBP12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 TMEM63BQ5T3F8 832 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 LVRNQ6Q4G3 990 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 POTEHQ6S545 545 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 MIER3Q7Z3K6 550 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 ULK2Q8IYT8 1036 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 IFNL3Q8IZI9 196 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 RBM15BQ8NDT2 890 aaKnown RBP12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 RBM15Q96T37 977 aaKnown RBP eCLIP12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 TSG101Q99816 390 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 TRABDQ9H4I3 376 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 AAASQ9NRG9 546 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 UVRAGQ9P2Y5 699 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 ADAMTS6Q9UKP5 1117 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 CCPG1Q9ULG6 757 aa12.72□□□□□ -0.37
LIMCH1-213ENST00000511496 BTNL10A8MVZ5 291 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 PCCAP05165 728 aaPredicted RBP12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 CHRNB2P17787 502 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 ACADVLP49748 655 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 SLC5A3P53794 718 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 PDIA6Q15084 440 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 TLR1Q15399 786 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 NPY5RQ15761 445 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 MAP3K21Q5TCX8 1036 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 IRF2BP2Q7Z5L9 587 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 ZNF410Q86VK4 478 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 TTC5Q8N0Z6 440 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 TNFRSF25Q93038 417 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 OSBPL8Q9BZF1 889 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 C12orf65Q9H3J6 166 aaKnown RBP12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 THEGQ9P2T0 379 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 FRMD4BQ9Y2L6 1034 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 TCRBV7S2A1N4TA0A589 114 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 CDH2P19022 906 aaPredicted RBP12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 SLC9A1P19634 815 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 GK3PQ14409 553 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 ADRM1Q16186 407 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 MAPK6Q16659 721 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 FAM209AQ5JX71 171 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 RABGAP1LQ5R372 815 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 HP1BP3Q5SSJ5 553 aaPredicted RBP12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 ARL6IP4Q66PJ3 421 aaKnown RBP12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 NET1Q7Z628 596 aaPredicted RBP12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 VPS36Q86VN1 386 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 PYROXD1Q8WU10 500 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 CCDC124Q96CT7 223 aaKnown RBP12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 CSRNP1Q96S65 589 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 TRIM55Q9BYV6 548 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 OSBPL6Q9BZF3 934 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 NRDE2Q9H7Z3 1164 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 COL4A3BPQ9Y5P4 624 aa12.71□□□□□ -0.37
LIMCH1-213ENST00000511496 ADGRA3Q8IWK6 1321 aa12.71□□□□□ -0.38
LIMCH1-213ENST00000511496 APOEP02649 317 aa12.71□□□□□ -0.38
LIMCH1-213ENST00000511496 ADD2P35612 726 aa12.71□□□□□ -0.38
LIMCH1-213ENST00000511496 PPP2R2DQ66LE6 453 aa12.71□□□□□ -0.38
LIMCH1-213ENST00000511496 ZDHHC14Q8IZN3 488 aa12.71□□□□□ -0.38
LIMCH1-213ENST00000511496 FAM172AQ8WUF8 416 aa12.71□□□□□ -0.38
LIMCH1-213ENST00000511496 CGREF1Q99674 301 aa12.71□□□□□ -0.38
LIMCH1-213ENST00000511496 CNNM2Q9H8M5 875 aa12.71□□□□□ -0.38
LIMCH1-213ENST00000511496 DISP2A7MBM2 1401 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 MCF2LO15068 1137 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 PRKAB2O43741 272 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 C6orf222P0C671 652 aaPredicted RBP12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 PABPC1P11940 636 aaKnown RBP12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 HOXC9P31274 260 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 MARCKSL1P49006 195 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 EPHB1P54762 984 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 PDAP1Q13442 181 aaKnown RBP12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 SPIDRQ14159 915 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 SYCP2LQ5T4T6 812 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 TMC7Q7Z402 723 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 EXOC8Q8IYI6 725 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 CENPSQ8N2Z9 138 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 TRIML2Q8N7C3 387 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 BHMTQ93088 406 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 TMIGD2Q96BF3 282 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 OLFML3Q9NRN5 406 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 RSL24D1Q9UHA3 163 aaKnown RBP12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 NOTOA8MTQ0 251 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 MINDY4BA8MYZ0 360 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 FCHO1O14526 889 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 XPO1O14980 1071 aaKnown RBP12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 CNOT3O75175 753 aaKnown RBP12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 RAP1GDS1P52306 607 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 ZNF200P98182 395 aaPredicted RBP12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 AMPD3Q01432 767 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 NR1H3Q13133 447 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 DCDC5Q6ZRR9 648 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 LRRC55Q6ZSA7 311 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 LPCAT2Q7L5N7 544 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 AMIGO2Q86SJ2 522 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 TMPRSS6Q8IU80 811 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 PASD1Q8IV76 773 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 KRT35Q92764 455 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 TMEM120AQ9BXJ8 343 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms