RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 COLEC11Q9BWP8 271 aa31.97■■■□□ 2.71
LIMCH1-211ENST00000509638 ANO9A1A5B4 782 aa31.96■■■□□ 2.71
LIMCH1-211ENST00000509638 KCNJ18B7U540 433 aa31.96■■■□□ 2.71
LIMCH1-211ENST00000509638 KRT19P08727 400 aa31.96■■■□□ 2.71
LIMCH1-211ENST00000509638 IGFBP6P24592 240 aaPredicted RBP31.96■■■□□ 2.71
LIMCH1-211ENST00000509638 KCNJ12Q14500 433 aa31.96■■■□□ 2.71
LIMCH1-211ENST00000509638 FBXO22Q8NEZ5 403 aa31.96■■■□□ 2.71
LIMCH1-211ENST00000509638 CXorf38Q8TB03 319 aa31.96■■■□□ 2.71
LIMCH1-211ENST00000509638 FAM200AQ8TCP9 573 aa31.96■■■□□ 2.71
LIMCH1-211ENST00000509638 TMEM169Q96HH4 297 aa31.96■■■□□ 2.71
LIMCH1-211ENST00000509638 BECN2A8MW95 431 aa31.95■■■□□ 2.71
LIMCH1-211ENST00000509638 STX10O60499 249 aa31.95■■■□□ 2.71
LIMCH1-211ENST00000509638 FGF18O76093 207 aa31.95■■■□□ 2.71
LIMCH1-211ENST00000509638 MTIF2P46199 727 aaKnown RBP31.95■■■□□ 2.71
LIMCH1-211ENST00000509638 ZACNQ401N2 412 aa31.95■■■□□ 2.71
LIMCH1-211ENST00000509638 SCARA3Q6AZY7 606 aa31.95■■■□□ 2.71
LIMCH1-211ENST00000509638 SV2AQ7L0J3 742 aa31.95■■■□□ 2.71
LIMCH1-211ENST00000509638 C11orf84Q9BUA3 381 aaPredicted RBP31.95■■■□□ 2.71
LIMCH1-211ENST00000509638 HSD3B7Q9H2F3 369 aa31.95■■■□□ 2.71
LIMCH1-211ENST00000509638 ZNF576Q9H609 170 aa31.95■■■□□ 2.71
LIMCH1-211ENST00000509638 ADAM28Q9UKQ2 775 aa31.95■■■□□ 2.71
LIMCH1-211ENST00000509638 UTP18Q9Y5J1 556 aaKnown RBP eCLIP31.95■■■□□ 2.71
LIMCH1-211ENST00000509638 TMEM265A0A087WTH1 108 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 SMTNL1A8MU46 457 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 TMEM189-UBE2V1I3L0A0 370 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 MXI1P50539 228 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 DCLRE1AQ6PJP8 1040 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 LUZP1Q86V48 1076 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 TMEM8AQ9HCN3 771 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 AGAP1Q9UPQ3 857 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 PIRO00625 290 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 PHACTR2O75167 634 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 C4BPAP04003 597 aaKnown RBP31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 RB1P06400 928 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 EEF1GP26641 437 aaKnown RBP31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 GTF2H1P32780 548 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 TCP11X2Q5H9J9 407 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 C15orf39Q6ZRI6 1047 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 NUB1Q9Y5A7 615 aa31.94■■■□□ 2.7
LIMCH1-211ENST00000509638 VWA8A3KMH1 1905 aa31.93■■■□□ 2.7
LIMCH1-211ENST00000509638 CBWD6Q4V339 395 aa31.93■■■□□ 2.7
LIMCH1-211ENST00000509638 CBWD3Q5JTY5 395 aa31.93■■■□□ 2.7
LIMCH1-211ENST00000509638 CBWD5Q5RIA9 395 aa31.93■■■□□ 2.7
LIMCH1-211ENST00000509638 ZNF560Q96MR9 790 aa31.93■■■□□ 2.7
LIMCH1-211ENST00000509638 TTYH1Q9H313 450 aaPredicted RBP31.93■■■□□ 2.7
LIMCH1-211ENST00000509638 R3HCC1Q9Y3T6 440 aaKnown RBP31.93■■■□□ 2.7
LIMCH1-211ENST00000509638 TSC2P49815 1807 aa31.93■■■□□ 2.7
LIMCH1-211ENST00000509638 ATG2AQ2TAZ0 1938 aa31.92■■■□□ 2.7
LIMCH1-211ENST00000509638 SF3B1O75533 1304 aaKnown RBP eCLIP31.92■■■□□ 2.7
LIMCH1-211ENST00000509638 EPOPA6NHQ4 379 aa31.92■■■□□ 2.7
LIMCH1-211ENST00000509638 TADA2AO75478 443 aa31.92■■■□□ 2.7
LIMCH1-211ENST00000509638 ZNF18P17022 549 aa31.92■■■□□ 2.7
LIMCH1-211ENST00000509638 RBP5P82980 135 aa31.92■■■□□ 2.7
LIMCH1-211ENST00000509638 KRT39Q6A163 491 aa31.92■■■□□ 2.7
LIMCH1-211ENST00000509638 CD300LGQ6UXG3 332 aa31.92■■■□□ 2.7
LIMCH1-211ENST00000509638 GDPD5Q8WTR4 605 aa31.92■■■□□ 2.7
LIMCH1-211ENST00000509638 ALG13Q9NP73 1137 aaKnown RBP31.92■■■□□ 2.7
LIMCH1-211ENST00000509638 PIK3CAP42336 1068 aa31.91■■■□□ 2.7
LIMCH1-211ENST00000509638 PLCB3Q01970 1234 aa31.91■■■□□ 2.7
LIMCH1-211ENST00000509638 TRPC3Q13507 836 aa31.91■■■□□ 2.7
LIMCH1-211ENST00000509638 FUT10Q6P4F1 479 aa31.91■■■□□ 2.7
LIMCH1-211ENST00000509638 LRRC52Q8N7C0 313 aa31.91■■■□□ 2.7
LIMCH1-211ENST00000509638 VN1R3Q9BXE9 311 aa31.91■■■□□ 2.7
LIMCH1-211ENST00000509638 VNN1O95497 513 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 FMO5P49326 533 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 MYL7Q01449 175 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 KCNH2Q12809 1159 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 NCOA4Q13772 614 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 ZNF697Q5TEC3 545 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 TUBGCP2Q9BSJ2 902 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 H3BNC9 293 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 I3L4J1 428 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 AFPP02771 609 aaKnown RBP31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 PRKCSHP14314 528 aaPredicted RBP31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 PNPLA4P41247 253 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 BRCC3P46736 316 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 TAF6P49848 677 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 LILRA4P59901 499 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 KRT17Q04695 432 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 GPM6BQ13491 265 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 MAN2A1Q16706 1144 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 TAS1R2Q8TE23 839 aa31.9■■■□□ 2.7
LIMCH1-211ENST00000509638 SPTLC1O15269 473 aa31.89■■■□□ 2.7
LIMCH1-211ENST00000509638 CST3P01034 146 aaPredicted RBP31.89■■■□□ 2.7
LIMCH1-211ENST00000509638 MYL6P60660 151 aa31.89■■■□□ 2.7
LIMCH1-211ENST00000509638 GPR62Q9BZJ7 368 aa31.89■■■□□ 2.7
LIMCH1-211ENST00000509638 TAB2Q9NYJ8 693 aa31.89■■■□□ 2.7
LIMCH1-211ENST00000509638 N4BP1O75113 896 aaKnown RBP31.88■■■□□ 2.69
LIMCH1-211ENST00000509638 CLSTN1O94985 981 aa31.88■■■□□ 2.69
LIMCH1-211ENST00000509638 HLA-DRAP01903 254 aa31.88■■■□□ 2.69
LIMCH1-211ENST00000509638 ATP1A3P13637 1013 aa31.88■■■□□ 2.69
LIMCH1-211ENST00000509638 AARSP49588 968 aaKnown RBP eCLIP31.88■■■□□ 2.69
LIMCH1-211ENST00000509638 MYO1EQ12965 1108 aa31.88■■■□□ 2.69
LIMCH1-211ENST00000509638 KRT31Q15323 416 aa31.88■■■□□ 2.69
LIMCH1-211ENST00000509638 SV2CQ496J9 727 aa31.88■■■□□ 2.69
LIMCH1-211ENST00000509638 HPDLQ96IR7 371 aa31.88■■■□□ 2.69
LIMCH1-211ENST00000509638 GOLGA6L19H0YKK7 550 aa31.87■■■□□ 2.69
LIMCH1-211ENST00000509638 GRM6O15303 877 aa31.87■■■□□ 2.69
LIMCH1-211ENST00000509638 CSPG5O95196 566 aa31.87■■■□□ 2.69
LIMCH1-211ENST00000509638 EFEMP2O95967 443 aa31.87■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms