RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 SPECC1LQ69YQ0 1117 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 SCARA3Q6AZY7 606 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 TRIM65Q6PJ69 517 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 GLB1LQ6UWU2 654 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 CNPY4Q8N129 248 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 LRRC52Q8N7C0 313 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 HELQQ8TDG4 1101 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 TAS1R2Q8TE23 839 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 SEMA4DQ92854 862 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 FAM81BQ96LP2 452 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.76□□□□□ -1.17
NUP54-204ENST00000506098 CRACR2AQ9BSW2 395 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 TTYH3Q9C0H2 523 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 XYLT2Q9H1B5 865 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 GANQ9H2C0 597 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 MMRN2Q9H8L6 949 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 RC3H2Q9HBD1 1191 aaKnown RBP7.76□□□□□ -1.17
NUP54-204ENST00000506098 GCNT4Q9P109 453 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 IMPACTQ9P2X3 320 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 LRFN2Q9ULH4 789 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 ZMYND8Q9ULU4 1186 aaPredicted RBP7.76□□□□□ -1.17
NUP54-204ENST00000506098 PLAGL2Q9UPG8 496 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.76□□□□□ -1.17
NUP54-204ENST00000506098 OBSL1O75147 1896 aa7.76□□□□□ -1.17
NUP54-204ENST00000506098 DOCK6Q96HP0 2047 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 TMEM189-UBE2V1I3L0A0 370 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 PHACTR2O75167 634 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 LRRN2O75325 713 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 ITGB3P05106 788 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 FGFR1P11362 822 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 RFX1P22670 979 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 PAX3P23760 479 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 PIK3CAP42336 1068 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 KLK7P49862 253 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 DEFB103AP81534 67 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 RBP5P82980 135 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 HTRA4P83105 476 aaPredicted RBP7.75□□□□□ -1.17
NUP54-204ENST00000506098 BIRC3Q13489 604 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 TRIM14Q14142 442 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 ARID5BQ14865 1188 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 GLRA4Q5JXX5 417 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 C9orf57Q5W0N0 161 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 PHLDB3Q6NSJ2 640 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 OTOP2Q7RTS6 562 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 COLGALT2Q8IYK4 626 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 RNF169Q8NCN4 708 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 NEK11Q8NG66 645 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 PHOSPHO2Q8TCD6 241 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 URGCPQ8TCY9 931 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 JAKMIP2Q96AA8 810 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 C18orf25Q96B23 403 aaPredicted RBP7.75□□□□□ -1.17
NUP54-204ENST00000506098 DDX27Q96GQ7 796 aaKnown RBP7.75□□□□□ -1.17
NUP54-204ENST00000506098 FAM84AQ96KN4 292 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 UROC1Q96N76 676 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 PPP1R9BQ96SB3 815 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 LBHD1Q9BQE6 289 aaPredicted RBP7.75□□□□□ -1.17
NUP54-204ENST00000506098 NAA15Q9BXJ9 866 aaKnown RBP7.75□□□□□ -1.17
NUP54-204ENST00000506098 MRPL9Q9BYD2 267 aaKnown RBP7.75□□□□□ -1.17
NUP54-204ENST00000506098 INTS2Q9H0H0 1204 aaKnown RBP7.75□□□□□ -1.17
NUP54-204ENST00000506098 FAM124BQ9H5Z6 455 aaPredicted RBP7.75□□□□□ -1.17
NUP54-204ENST00000506098 TBC1D13Q9NVG8 400 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 CEP72Q9P209 647 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 APEX2Q9UBZ4 518 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 TUBGCP4Q9UGJ1 667 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 CAPN11Q9UMQ6 739 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 MYO7AQ13402 2215 aa7.75□□□□□ -1.17
NUP54-204ENST00000506098 CARNS1A5YM72 827 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 EPHB6O15197 1021 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 DDHD2O94830 711 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 GJB5O95377 273 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 POMCP01189 267 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 GYPCP04921 128 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 FAM163BP0C2L3 166 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 UCHL3P15374 230 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 TBXAS1P24557 533 aaPredicted RBP7.74□□□□□ -1.17
NUP54-204ENST00000506098 POLR2BP30876 1174 aaKnown RBP7.74□□□□□ -1.17
NUP54-204ENST00000506098 PNPLA4P41247 253 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 KCNJ6P48051 423 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 AARSP49588 968 aaKnown RBP eCLIP7.74□□□□□ -1.17
NUP54-204ENST00000506098 GUCY2FP51841 1108 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 JAM2P57087 298 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 MYL6P60660 151 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 NOP14P78316 857 aaKnown RBP7.74□□□□□ -1.17
NUP54-204ENST00000506098 GCNT1Q02742 428 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 TRPC3Q13507 836 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 PTPN21Q16825 1174 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 UPP1Q16831 310 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 WDR44Q5JSH3 913 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 CD300LGQ6UXG3 332 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 ENOSF1Q7L5Y1 443 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 TMC6Q7Z403 805 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 LIMS2Q7Z4I7 341 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 ZNF280BQ86YH2 543 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 CMTR2Q8IYT2 770 aaKnown RBP7.74□□□□□ -1.17
NUP54-204ENST00000506098 ABI1Q8IZP0 508 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 TMEM130Q8N3G9 435 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 CCDC150Q8NCX0 1101 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 TATDN2Q93075 761 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 ZNF560Q96MR9 790 aa7.74□□□□□ -1.17
NUP54-204ENST00000506098 NT5C1BQ96P26 610 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms