RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 TMTC2Q8N394 836 aa13.9□□□□□ -0.18
LSM6-204ENST00000504181 ZNF713Q8N859 430 aaPredicted RBP13.9□□□□□ -0.18
LSM6-204ENST00000504181 SLC5A5Q92911 643 aa13.9□□□□□ -0.18
LSM6-204ENST00000504181 ZNF512Q96ME7 567 aaPredicted RBP13.9□□□□□ -0.18
LSM6-204ENST00000504181 NUSAP1Q9BXS6 441 aaKnown RBP13.9□□□□□ -0.18
LSM6-204ENST00000504181 CXCL16Q9H2A7 254 aa13.9□□□□□ -0.18
LSM6-204ENST00000504181 ASAH2Q9NR71 780 aa13.9□□□□□ -0.18
LSM6-204ENST00000504181 CEP72Q9P209 647 aa13.9□□□□□ -0.18
LSM6-204ENST00000504181 BACE2Q9Y5Z0 518 aa13.9□□□□□ -0.18
LSM6-204ENST00000504181 V9GY48 417 aaPredicted RBP13.9□□□□□ -0.18
LSM6-204ENST00000504181 TSC2P49815 1807 aa13.9□□□□□ -0.18
LSM6-204ENST00000504181 ANK1P16157 1881 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 GOLGA4Q13439 2230 aaKnown RBP13.89□□□□□ -0.19
LSM6-204ENST00000504181 I3L4J1 428 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 PTGESO14684 152 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 B4GALT5O43286 388 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 ABLIM3O94929 683 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 THP07101 528 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 ENGP17813 658 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 DGKEP52429 567 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 SEMA3BQ13214 749 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 ARHGAP29Q52LW3 1261 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 SLC27A1Q6PCB7 646 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 ANKS3Q6ZW76 656 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 FERMT3Q86UX7 667 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 PLEKHM2Q8IWE5 1019 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 RDM1Q8NG50 284 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 SHKBP1Q8TBC3 707 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 LRRC3BQ96PB8 259 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 TPSD1Q9BZJ3 242 aa13.89□□□□□ -0.19
LSM6-204ENST00000504181 DHX33Q9H6R0 707 aaKnown RBP13.89□□□□□ -0.19
LSM6-204ENST00000504181 DPYSL4O14531 572 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 PSMD10O75832 226 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 APBB3O95704 486 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 EGFP01133 1207 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 ATF2P15336 505 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 BCKDHBP21953 392 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 PTENP60484 403 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 TWF1Q12792 350 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 GRSF1Q12849 480 aaKnown RBP eCLIP13.88□□□□□ -0.19
LSM6-204ENST00000504181 NAB2Q15742 525 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 AMHR2Q16671 573 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 TMEM196Q5HYL7 178 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 STXBP5Q5T5C0 1151 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 ARID3BQ8IVW6 561 aaPredicted RBP13.88□□□□□ -0.19
LSM6-204ENST00000504181 TCEAL8Q8IYN2 117 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 REXO1Q8N1G1 1221 aaKnown RBP13.88□□□□□ -0.19
LSM6-204ENST00000504181 CCDC136Q96JN2 1154 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 TMEM87BQ96K49 555 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 CEP170P1Q96L14 293 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 MTA3Q9BTC8 594 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 LRRC2Q9BYS8 371 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 GPR88Q9GZN0 384 aa13.88□□□□□ -0.19
LSM6-204ENST00000504181 EVLQ9UI08 416 aaPredicted RBP13.88□□□□□ -0.19
LSM6-204ENST00000504181 A0A1W2PRU2 124 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 UPK3BL1B0FP48 263 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 UPK3BL2E5RIL1 263 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 ASAP2O43150 1006 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 MCM5P33992 734 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 LIFRP42702 1097 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 BRCC3P46736 316 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 EPHA5P54756 1037 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 PSMC5P62195 406 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 MBTD1Q05BQ5 628 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 FUT2Q10981 343 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 EMC2Q15006 297 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 PCBP1Q15365 356 aaKnown RBP eCLIP13.87□□□□□ -0.19
LSM6-204ENST00000504181 ITPRIPL2Q3MIP1 535 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 SLC8B1Q6J4K2 584 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 CCNI2Q6ZMN8 369 aaPredicted RBP13.87□□□□□ -0.19
LSM6-204ENST00000504181 HDDC3Q8N4P3 179 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 PNPLA1Q8N8W4 532 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 RPLP0P6Q8NHW5 317 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 TCP11Q8WWU5 503 aa13.87□□□□□ -0.19
LSM6-204ENST00000504181 HNRNPABQ99729 332 aaKnown RBP13.87□□□□□ -0.19
LSM6-204ENST00000504181 MBD1Q9UIS9 605 aaPredicted RBP13.87□□□□□ -0.19
LSM6-204ENST00000504181 J3QKU1 62 aa13.86□□□□□ -0.19
LSM6-204ENST00000504181 TK2O00142 265 aa13.86□□□□□ -0.19
LSM6-204ENST00000504181 EDIL3O43854 480 aa13.86□□□□□ -0.19
LSM6-204ENST00000504181 B3GAT3O94766 335 aa13.86□□□□□ -0.19
LSM6-204ENST00000504181 ARMCX6Q7L4S7 300 aa13.86□□□□□ -0.19
LSM6-204ENST00000504181 EXOC8Q8IYI6 725 aa13.86□□□□□ -0.19
LSM6-204ENST00000504181 LEMD2Q8NC56 503 aa13.86□□□□□ -0.19
LSM6-204ENST00000504181 OSBPL3Q9H4L5 887 aa13.86□□□□□ -0.19
LSM6-204ENST00000504181 FSCN3Q9NQT6 498 aa13.86□□□□□ -0.19
LSM6-204ENST00000504181 RBM28Q9NW13 759 aaKnown RBP13.86□□□□□ -0.19
LSM6-204ENST00000504181 EBF1Q9UH73 591 aa13.86□□□□□ -0.19
LSM6-204ENST00000504181 ATMQ13315 3056 aa13.86□□□□□ -0.19
LSM6-204ENST00000504181 ATXN2Q99700 1313 aaKnown RBP13.86□□□□□ -0.19
LSM6-204ENST00000504181 TMEM189-UBE2V1I3L0A0 370 aa13.85□□□□□ -0.19
LSM6-204ENST00000504181 RFC5P40937 340 aa13.85□□□□□ -0.19
LSM6-204ENST00000504181 CLCNKBP51801 687 aa13.85□□□□□ -0.19
LSM6-204ENST00000504181 DMC1Q14565 340 aa13.85□□□□□ -0.19
LSM6-204ENST00000504181 USP39Q53GS9 565 aaKnown RBP13.85□□□□□ -0.19
LSM6-204ENST00000504181 B4GALNT3Q6L9W6 998 aa13.85□□□□□ -0.19
LSM6-204ENST00000504181 B3GNT9Q6UX72 402 aa13.85□□□□□ -0.19
LSM6-204ENST00000504181 C11orf74Q86VG3 221 aa13.85□□□□□ -0.19
LSM6-204ENST00000504181 ZNF843Q8N446 348 aa13.85□□□□□ -0.19
LSM6-204ENST00000504181 ADAMTS14Q8WXS8 1223 aa13.85□□□□□ -0.19
LSM6-204ENST00000504181 GTPBP2Q9BX10 602 aaKnown RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms