RNA–Protein interactions for RNA: ENST00000498814.1

CPNE1-228, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-228ENST00000498814 MICALL1Q8N3F8 863 aa16.82■□□□□ 0.28
CPNE1-228ENST00000498814 C1orf127Q8N9H9 656 aa16.82■□□□□ 0.28
CPNE1-228ENST00000498814 OR5B17Q8NGF7 314 aa16.82■□□□□ 0.28
CPNE1-228ENST00000498814 MAFAQ8NHW3 353 aaPredicted RBP16.82■□□□□ 0.28
CPNE1-228ENST00000498814 PLEKHO2Q8TD55 490 aa16.82■□□□□ 0.28
CPNE1-228ENST00000498814 TMC2Q8TDI7 906 aa16.82■□□□□ 0.28
CPNE1-228ENST00000498814 PARD3BQ8TEW8 1205 aa16.82■□□□□ 0.28
CPNE1-228ENST00000498814 PPP2R3CQ969Q6 453 aa16.82■□□□□ 0.28
CPNE1-228ENST00000498814 ANKRD36BP1Q96IX9 119 aa16.82■□□□□ 0.28
CPNE1-228ENST00000498814 CGRRF1Q99675 332 aa16.82■□□□□ 0.28
CPNE1-228ENST00000498814 MRPL17Q9NRX2 175 aaKnown RBP16.82■□□□□ 0.28
CPNE1-228ENST00000498814 ITGA11Q9UKX5 1188 aa16.82■□□□□ 0.28
CPNE1-228ENST00000498814 HIDE1A8MVS5 230 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 PPEF2O14830 753 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 TNNC2P02585 160 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 TNNI1P19237 187 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 FGFR3P22607 806 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 BRCC3P46736 316 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 AARSP49588 968 aaKnown RBP eCLIP16.81■□□□□ 0.28
CPNE1-228ENST00000498814 NLRP12P59046 1061 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 PAK1Q13153 545 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 LMBRD2Q68DH5 695 aaPredicted RBP16.81■□□□□ 0.28
CPNE1-228ENST00000498814 KIAA1841Q6NSI8 718 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 TTI2Q6NXR4 508 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.81■□□□□ 0.28
CPNE1-228ENST00000498814 INTS8Q75QN2 995 aaKnown RBP16.81■□□□□ 0.28
CPNE1-228ENST00000498814 ADGRD2Q7Z7M1 963 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 FAM186BQ8IYM0 893 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 CXorf38Q8TB03 319 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 AUTS2Q8WXX7 1259 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 SUSD3Q96L08 255 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 POP1Q99575 1024 aaKnown RBP16.81■□□□□ 0.28
CPNE1-228ENST00000498814 TTPALQ9BTX7 342 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 MTMR12Q9C0I1 747 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 CTNND2Q9UQB3 1225 aa16.81■□□□□ 0.28
CPNE1-228ENST00000498814 LRRIQ3A6PVS8 624 aaPredicted RBP16.8■□□□□ 0.28
CPNE1-228ENST00000498814 I3L4J1 428 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 SYN3O14994 580 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 SLC16A3O15427 465 aaKnown RBP16.8■□□□□ 0.28
CPNE1-228ENST00000498814 ITGB3P05106 788 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 AP3M2P53677 418 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 LILRA4P59901 499 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 CCDC85BQ15834 202 aaPredicted RBP16.8■□□□□ 0.28
CPNE1-228ENST00000498814 RTP2Q5QGT7 225 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 PDXDC1Q6P996 788 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 TRAPPC11Q7Z392 1133 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 USP37Q86T82 979 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 CSGALNACT2Q8N6G5 542 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 PIK3R5Q8WYR1 880 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 ZNF516Q92618 1163 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 EEF2KMTQ96G04 330 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 BORCS6Q96GS4 357 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 FAM84AQ96KN4 292 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 B3GALT6Q96L58 329 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 CDCA3Q99618 268 aaPredicted RBP16.8■□□□□ 0.28
CPNE1-228ENST00000498814 DUSP9Q99956 384 aaKnown RBP16.8■□□□□ 0.28
CPNE1-228ENST00000498814 TLE6Q9H808 572 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 RXFP1Q9HBX9 757 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 TMEM63CQ9P1W3 806 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 RWDD2AQ9UIY3 292 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 BRWD1Q9NSI6 2320 aa16.8■□□□□ 0.28
CPNE1-228ENST00000498814 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.79■□□□□ 0.28
CPNE1-228ENST00000498814 FSD2A1L4K1 749 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 M0QZQ0 153 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 IKBKBO14920 756 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 NCK2O43639 380 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 EPB41P11171 864 aaKnown RBP16.79■□□□□ 0.28
CPNE1-228ENST00000498814 KRT13P13646 458 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 POLR2BP30876 1174 aaKnown RBP16.79■□□□□ 0.28
CPNE1-228ENST00000498814 PNPLA4P41247 253 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 TAF6P49848 677 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 VAMP7P51809 220 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 STX17P56962 302 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 DLG4P78352 724 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 RBP5P82980 135 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 HYAL1Q12794 435 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 COL19A1Q14993 1142 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 KLHL40Q2TBA0 621 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 DPCR1Q3MIW9 517 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 FILIP1Q7Z7B0 1213 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 CEP57Q86XR8 500 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 LRRC52Q8N7C0 313 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 PPM1EQ8WY54 764 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 RIN2Q8WYP3 895 aaPredicted RBP16.79■□□□□ 0.28
CPNE1-228ENST00000498814 SYAP1Q96A49 352 aaPredicted RBP16.79■□□□□ 0.28
CPNE1-228ENST00000498814 ZNF560Q96MR9 790 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 CEP63Q96MT8 703 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 EMILIN2Q9BXX0 1053 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.79■□□□□ 0.28
CPNE1-228ENST00000498814 DACH1Q9UI36 760 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 SIX4Q9UIU6 781 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 PCDHB8Q9UN66 801 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 AGAP1Q9UPQ3 857 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 COL6A3P12111 3177 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 EYSQ5T1H1 3165 aa16.79■□□□□ 0.28
CPNE1-228ENST00000498814 C2CD2LO14523 706 aa16.78■□□□□ 0.28
CPNE1-228ENST00000498814 SPTLC1O15269 473 aa16.78■□□□□ 0.28
CPNE1-228ENST00000498814 CNPP09543 421 aaKnown RBP16.78■□□□□ 0.28
CPNE1-228ENST00000498814 TKTP29401 623 aaKnown RBP16.78■□□□□ 0.28
CPNE1-228ENST00000498814 CA8P35219 290 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms