RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 SHC3Q92529 594 aa11.01□□□□□ -0.65
HDAC3-214ENST00000495485 TSPAN18Q96SJ8 248 aa11.01□□□□□ -0.65
HDAC3-214ENST00000495485 POP1Q99575 1024 aaKnown RBP11.01□□□□□ -0.65
HDAC3-214ENST00000495485 GDF15Q99988 308 aa11.01□□□□□ -0.65
HDAC3-214ENST00000495485 FDXACB1Q9BRP7 624 aaPredicted RBP11.01□□□□□ -0.65
HDAC3-214ENST00000495485 DNAI2Q9GZS0 605 aa11.01□□□□□ -0.65
HDAC3-214ENST00000495485 IL23AQ9NPF7 189 aa11.01□□□□□ -0.65
HDAC3-214ENST00000495485 SEPT11Q9NVA2 429 aaKnown RBP11.01□□□□□ -0.65
HDAC3-214ENST00000495485 RNF14Q9UBS8 474 aa11.01□□□□□ -0.65
HDAC3-214ENST00000495485 ZNF263O14978 683 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 RTN2O75298 545 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 TUBBP07437 444 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 TMEM253P0C7T8 217 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 P4HA1P13674 534 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 PAFAH1B1P43034 410 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 NOP2P46087 812 aaKnown RBP11□□□□□ -0.65
HDAC3-214ENST00000495485 YARSP54577 528 aaKnown RBP11□□□□□ -0.65
HDAC3-214ENST00000495485 MRPS6P82932 125 aaKnown RBP11□□□□□ -0.65
HDAC3-214ENST00000495485 PAPD7Q5XG87 772 aaKnown RBP11□□□□□ -0.65
HDAC3-214ENST00000495485 ARHGEF19Q8IW93 802 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 RHOT2Q8IXI1 618 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 THNSL1Q8IYQ7 743 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 KIAA0319LQ8IZA0 1049 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 TTC39CQ8N584 583 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 ZSWIM2Q8NEG5 633 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 TAS1R2Q8TE23 839 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 RSPH1Q8WYR4 309 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 GOLGA1Q92805 767 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 FAM212AQ96EL1 285 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 TRIM11Q96F44 468 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 CCDC94Q9BW85 323 aaPredicted RBP11□□□□□ -0.65
HDAC3-214ENST00000495485 FTHL17Q9BXU8 183 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 IRX2Q9BZI1 471 aaPredicted RBP11□□□□□ -0.65
HDAC3-214ENST00000495485 LACRTQ9GZZ8 138 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 FAM124BQ9H5Z6 455 aaPredicted RBP11□□□□□ -0.65
HDAC3-214ENST00000495485 IFT122Q9HBG6 1241 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 PTPRHQ9HD43 1115 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 ARGLU1Q9NWB6 273 aaPredicted RBP11□□□□□ -0.65
HDAC3-214ENST00000495485 PCDHB2Q9Y5E7 798 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 SCN5AQ14524 2016 aa11□□□□□ -0.65
HDAC3-214ENST00000495485 TTC3P53804 2025 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 CTAGE15A4D2H0 777 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 ANKRD62A6NC57 917 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 XPOTO43592 962 aaKnown RBP10.99□□□□□ -0.65
HDAC3-214ENST00000495485 LRRN2O75325 713 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 VTNP04004 478 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 CTAGE8P0CG41 777 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 KRT5P13647 590 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 ATICP31939 592 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 CYP2C18P33260 490 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 MAGEA10P43363 369 aaPredicted RBP10.99□□□□□ -0.65
HDAC3-214ENST00000495485 CRYBB1P53674 252 aaPredicted RBP10.99□□□□□ -0.65
HDAC3-214ENST00000495485 NCOA4Q13772 614 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 CLUL1Q15846 466 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 ZNF618Q5T7W0 954 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 TDRD10Q5VZ19 366 aaKnown RBP10.99□□□□□ -0.65
HDAC3-214ENST00000495485 NOTUMQ6P988 496 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 CNKSR3Q6P9H4 555 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 TRIM72Q6ZMU5 477 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 CATSPER4Q7RTX7 472 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 CTAGE6Q86UF2 777 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 CTAGE4Q8IX94 777 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 SLC30A5Q8TAD4 765 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 HELQQ8TDG4 1101 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 DNAJB3Q8WWF6 145 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 SEPT8Q92599 483 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 SEMA4DQ92854 862 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 BADQ92934 168 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 ACAP3Q96P50 834 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 SELENOOQ9BVL4 669 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 CELF4Q9BZC1 486 aaKnown RBP10.99□□□□□ -0.65
HDAC3-214ENST00000495485 PPP1R12CQ9BZL4 782 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 UBE2OQ9C0C9 1292 aaKnown RBP10.99□□□□□ -0.65
HDAC3-214ENST00000495485 WNT8AQ9H1J5 351 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 PDCL3Q9H2J4 239 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 PLEKHA5Q9HAU0 1116 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 TOPORSQ9NS56 1045 aaPredicted RBP10.99□□□□□ -0.65
HDAC3-214ENST00000495485 ZMYND8Q9ULU4 1186 aaPredicted RBP10.99□□□□□ -0.65
HDAC3-214ENST00000495485 DERAQ9Y315 318 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 HYOU1Q9Y4L1 999 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 TRPV2Q9Y5S1 764 aa10.99□□□□□ -0.65
HDAC3-214ENST00000495485 A0A1B0GUA9 196 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 ABHD14A-ACY1A0A1B0GW23 586 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 DDX3XO00571 662 aaKnown RBP eCLIP10.98□□□□□ -0.654e-13■■■■□ 23.7
HDAC3-214ENST00000495485 GPR182O15218 404 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 MOCS3O95396 460 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 STAG3L1P0CL83 205 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 MCM3P25205 808 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 ZNF200P98182 395 aaPredicted RBP10.98□□□□□ -0.65
HDAC3-214ENST00000495485 TFAMQ00059 246 aaKnown RBP10.98□□□□□ -0.65
HDAC3-214ENST00000495485 CDR2Q01850 454 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 MGAT3Q09327 533 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 HIC1Q14526 733 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 CCDC181Q5TID7 509 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 SLC27A1Q6PCB7 646 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 TRAPPC11Q7Z392 1133 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 GLYCTKQ8IVS8 523 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 ZNF516Q92618 1163 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 CARD6Q9BX69 1037 aa10.98□□□□□ -0.65
HDAC3-214ENST00000495485 TRIM6Q9C030 488 aaPredicted RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms