RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 NUB1Q9Y5A7 615 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 PCDHB12Q9Y5F1 795 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 PLXNA4Q9HCM2 1894 aa16.99■□□□□ 0.31
HPS4-216ENST00000493455 I3L4J1 428 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 B3GAT3O94766 335 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 HLA-DRAP01903 254 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 C4BPAP04003 597 aaKnown RBP16.98■□□□□ 0.31
HPS4-216ENST00000493455 ITGB1P05556 798 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 IGFBP6P24592 240 aaPredicted RBP16.98■□□□□ 0.31
HPS4-216ENST00000493455 DNAJB2P25686 324 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 RBP5P82980 135 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 NCOA4Q13772 614 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 TAS1R2Q8TE23 839 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 DDX27Q96GQ7 796 aaKnown RBP16.98■□□□□ 0.31
HPS4-216ENST00000493455 TMEM175Q9BSA9 504 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 CRACR2AQ9BSW2 395 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 PI4K2AQ9BTU6 479 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 COLEC11Q9BWP8 271 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 NDST4Q9H3R1 872 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 SLC28A3Q9HAS3 691 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 LIMA1Q9UHB6 759 aaKnown RBP16.98■□□□□ 0.31
HPS4-216ENST00000493455 SIX4Q9UIU6 781 aa16.98■□□□□ 0.31
HPS4-216ENST00000493455 N4BP1O75113 896 aaKnown RBP16.97■□□□□ 0.31
HPS4-216ENST00000493455 LRRN2O75325 713 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 TADA2AO75478 443 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 VNN1O95497 513 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 CST3P01034 146 aaPredicted RBP16.97■□□□□ 0.31
HPS4-216ENST00000493455 LRPAP1P30533 357 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 GTF2H1P32780 548 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 RPL9P32969 192 aaKnown RBP16.97■□□□□ 0.31
HPS4-216ENST00000493455 BRCC3P46736 316 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 MYL6P60660 151 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 CLDN10P78369 228 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 FANCCQ00597 558 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 LRMPQ12912 555 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 UPP1Q16831 310 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 ZACNQ401N2 412 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 MIIPQ5JXC2 388 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 TMEM173Q86WV6 379 aaPredicted RBP16.97■□□□□ 0.31
HPS4-216ENST00000493455 C3orf58Q8NDZ4 430 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 TIFAQ96CG3 184 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 ZNF560Q96MR9 790 aa16.97■□□□□ 0.31
HPS4-216ENST00000493455 CA8P35219 290 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 TAF6P49848 677 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 TAP1Q03518 808 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 ENPEPQ07075 957 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 CETN1Q12798 172 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 MYO1EQ12965 1108 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 PTPN21Q16825 1174 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 ZNF699Q32M78 642 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 FILIP1LQ4L180 1135 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 FKBP15Q5T1M5 1219 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 SPOPLQ6IQ16 392 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 DCLRE1AQ6PJP8 1040 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 DSTYKQ6XUX3 929 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 SCARA5Q6ZMJ2 495 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 CCDC150Q8NCX0 1101 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 FBXL13Q8NEE6 735 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 BCL7CQ8WUZ0 217 aaPredicted RBP16.96■□□□□ 0.31
HPS4-216ENST00000493455 SEMA4DQ92854 862 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 TMEM169Q96HH4 297 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 HPDLQ96IR7 371 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 PCMTD1Q96MG8 357 aaPredicted RBP16.96■□□□□ 0.31
HPS4-216ENST00000493455 TGS1Q96RS0 853 aaKnown RBP16.96■□□□□ 0.31
HPS4-216ENST00000493455 IMPG2Q9BZV3 1241 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 MARCH5Q9NX47 278 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 SPG21Q9NZD8 308 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 GCNT4Q9P109 453 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 NXF1Q9UBU9 619 aaKnown RBP16.96■□□□□ 0.31
HPS4-216ENST00000493455 ADAM28Q9UKQ2 775 aa16.96■□□□□ 0.31
HPS4-216ENST00000493455 A0A1W2PPC1 479 aa16.95■□□□□ 0.3
HPS4-216ENST00000493455 ANO9A1A5B4 782 aa16.95■□□□□ 0.3
HPS4-216ENST00000493455 PIRO00625 290 aa16.95■□□□□ 0.3
HPS4-216ENST00000493455 SMAD3P84022 425 aaKnown RBP16.95■□□□□ 0.3
HPS4-216ENST00000493455 UBXN1Q04323 297 aa16.95■□□□□ 0.3
HPS4-216ENST00000493455 SV2CQ496J9 727 aa16.95■□□□□ 0.3
HPS4-216ENST00000493455 C15orf39Q6ZRI6 1047 aa16.95■□□□□ 0.3
HPS4-216ENST00000493455 SLC39A11Q8N1S5 342 aa16.95■□□□□ 0.3
HPS4-216ENST00000493455 KLHL23Q8NBE8 558 aa16.95■□□□□ 0.3
HPS4-216ENST00000493455 ARNTL2Q8WYA1 636 aa16.95■□□□□ 0.3
HPS4-216ENST00000493455 CLP1Q92989 425 aaKnown RBP16.95■□□□□ 0.3
HPS4-216ENST00000493455 IGSF21Q96ID5 467 aa16.95■□□□□ 0.3
HPS4-216ENST00000493455 RAB20Q9NX57 234 aa16.95■□□□□ 0.3
HPS4-216ENST00000493455 IFNKQ9P0W0 207 aa16.95■□□□□ 0.3
HPS4-216ENST00000493455 POLIQ9UNA4 740 aa16.95■□□□□ 0.3
HPS4-216ENST00000493455 RWDD3Q9Y3V2 267 aa16.95■□□□□ 0.3
HPS4-216ENST00000493455 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.95■□□□□ 0.3
HPS4-216ENST00000493455 SPTLC1O15269 473 aa16.94■□□□□ 0.3
HPS4-216ENST00000493455 LINC00271P0C7V0 271 aa16.94■□□□□ 0.3
HPS4-216ENST00000493455 PPM1AP35813 382 aa16.94■□□□□ 0.3
HPS4-216ENST00000493455 BMPR1AP36894 532 aa16.94■□□□□ 0.3
HPS4-216ENST00000493455 UBASH3AP57075 661 aa16.94■□□□□ 0.3
HPS4-216ENST00000493455 TNNC1P63316 161 aa16.94■□□□□ 0.3
HPS4-216ENST00000493455 EPC2Q52LR7 807 aa16.94■□□□□ 0.3
HPS4-216ENST00000493455 WDR44Q5JSH3 913 aa16.94■□□□□ 0.3
HPS4-216ENST00000493455 GBP6Q6ZN66 633 aa16.94■□□□□ 0.3
HPS4-216ENST00000493455 CEP57Q86XR8 500 aa16.94■□□□□ 0.3
HPS4-216ENST00000493455 FBXO22Q8NEZ5 403 aa16.94■□□□□ 0.3
HPS4-216ENST00000493455 B3GALT6Q96L58 329 aa16.94■□□□□ 0.3
HPS4-216ENST00000493455 MMS19Q96T76 1030 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms