RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 CDHR1Q96JP9 859 aa13.27□□□□□ -0.28
HMGN1-220ENST00000492280 CEP89Q96ST8 783 aa13.27□□□□□ -0.28
HMGN1-220ENST00000492280 EPN3Q9H201 632 aa13.27□□□□□ -0.28
HMGN1-220ENST00000492280 HOXC10Q9NYD6 342 aa13.27□□□□□ -0.28
HMGN1-220ENST00000492280 ADAM22Q9P0K1 906 aa13.27□□□□□ -0.28
HMGN1-220ENST00000492280 UVRAGQ9P2Y5 699 aa13.27□□□□□ -0.28
HMGN1-220ENST00000492280 DIS3Q9Y2L1 958 aaKnown RBP13.27□□□□□ -0.28
HMGN1-220ENST00000492280 PMM2O15305 246 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 TP73O15350 636 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 ECEL1O95672 775 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 CREB1P16220 341 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 RAP1GAPP47736 663 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 STAT5BP51692 787 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 OAZ1P54368 228 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 MTM1Q13496 603 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 NCOA4Q13772 614 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 SPRED3Q2MJR0 410 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 CYP4A22Q5TCH4 519 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 TXNRD3NBQ6F5E7 133 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 MON1BQ7L1V2 547 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 USP37Q86T82 979 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 RNF149Q8NC42 400 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 C1orf131Q8NDD1 294 aaKnown RBP13.27□□□□□ -0.29
HMGN1-220ENST00000492280 NLRP4Q96MN2 994 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 PABPC3Q9H361 631 aaKnown RBP13.27□□□□□ -0.29
HMGN1-220ENST00000492280 PCYOX1Q9UHG3 505 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 PCDHB2Q9Y5E7 798 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 CNTNAP2Q9UHC6 1331 aa13.27□□□□□ -0.29
HMGN1-220ENST00000492280 FAM187AA6NFU0 413 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 ITGBL1O95965 494 aaPredicted RBP13.26□□□□□ -0.29
HMGN1-220ENST00000492280 CLTAP09496 248 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 FDX1P10109 184 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 ARL2P36404 184 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 IFNAR2P48551 515 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 MYL6P60660 151 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 NOMO3P69849 1222 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 IGBP1P78318 339 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 PACS2Q86VP3 889 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 TAB3Q8N5C8 712 aaPredicted RBP13.26□□□□□ -0.29
HMGN1-220ENST00000492280 GLIS1Q8NBF1 620 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 MTUS1Q9ULD2 1270 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 GTF2H1P32780 548 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 NAMPTP43490 491 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 TFAMQ00059 246 aaKnown RBP13.26□□□□□ -0.29
HMGN1-220ENST00000492280 LBX2Q6XYB7 198 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 RHPN2Q8IUC4 686 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 MGARPQ8TDB4 240 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 RAPGEF5Q92565 580 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 DDX27Q96GQ7 796 aaKnown RBP13.26□□□□□ -0.29
HMGN1-220ENST00000492280 ADAM33Q9BZ11 813 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 C10orf88Q9H8K7 445 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 AAASQ9NRG9 546 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 A0A0B4J269 797 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 DKC1O60832 514 aaKnown RBP eCLIP13.26□□□□□ -0.29
HMGN1-220ENST00000492280 ATF7P17544 494 aaPredicted RBP13.26□□□□□ -0.29
HMGN1-220ENST00000492280 CLCN3P51790 818 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 IFT88Q13099 833 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 RNF187Q5TA31 235 aaPredicted RBP13.26□□□□□ -0.29
HMGN1-220ENST00000492280 RUFY4Q6ZNE9 571 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 CAPN12Q6ZSI9 719 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 SPATC1LQ9H0A9 340 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 CDC42EP4Q9H3Q1 356 aaKnown RBP13.26□□□□□ -0.29
HMGN1-220ENST00000492280 GINM1Q9NU53 330 aa13.26□□□□□ -0.29
HMGN1-220ENST00000492280 OTOFQ9HC10 1997 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 TLR3O15455 904 aaKnown RBP13.25□□□□□ -0.29
HMGN1-220ENST00000492280 CENPCQ03188 943 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 LRRC14Q15048 493 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 TMEM132AQ24JP5 1023 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 Q3C1V9 767 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 EIF1ADQ8N9N8 165 aaKnown RBP13.25□□□□□ -0.29
HMGN1-220ENST00000492280 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.25□□□□□ -0.29
HMGN1-220ENST00000492280 MCEEQ96PE7 176 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 CGRRF1Q99675 332 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 PDGFCQ9NRA1 345 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 PASKQ96RG2 1323 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 ATP2A1O14983 1001 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 ERLIN2O94905 339 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 CYP1A1P04798 512 aaPredicted RBP13.25□□□□□ -0.29
HMGN1-220ENST00000492280 ETS1P14921 441 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 CHN1P15882 459 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 RTP1P59025 263 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 IRX3P78415 501 aaPredicted RBP13.25□□□□□ -0.29
HMGN1-220ENST00000492280 MAMLD1Q13495 774 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 FBXW10Q5XX13 1052 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 KAT2BQ92831 832 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 VTI1AQ96AJ9 217 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 NXF1Q9UBU9 619 aaKnown RBP13.25□□□□□ -0.29
HMGN1-220ENST00000492280 TBK1Q9UHD2 729 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 POLIQ9UNA4 740 aa13.25□□□□□ -0.29
HMGN1-220ENST00000492280 ADGRA2Q96PE1 1338 aa13.24□□□□□ -0.29
HMGN1-220ENST00000492280 F8VP50 259 aa13.24□□□□□ -0.29
HMGN1-220ENST00000492280 RIPK2O43353 540 aa13.24□□□□□ -0.29
HMGN1-220ENST00000492280 ZSCAN5DPP0CG00 497 aa13.24□□□□□ -0.29
HMGN1-220ENST00000492280 CDR1P51861 262 aa13.24□□□□□ -0.29
HMGN1-220ENST00000492280 ITGA8P53708 1063 aa13.24□□□□□ -0.29
HMGN1-220ENST00000492280 OGDHQ02218 1023 aa13.24□□□□□ -0.29
HMGN1-220ENST00000492280 TTLL12Q14166 644 aaPredicted RBP13.24□□□□□ -0.29
HMGN1-220ENST00000492280 EEF1DP3Q658K8 133 aa13.24□□□□□ -0.29
HMGN1-220ENST00000492280 DPH6Q7L8W6 267 aa13.24□□□□□ -0.29
HMGN1-220ENST00000492280 MINDY3Q9H8M7 445 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms