RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 KIF12Q96FN5 646 aa14.87□□□□□ -0.03
COL6A3-211ENST00000491233 CYP4F11Q9HBI6 524 aa14.87□□□□□ -0.03
COL6A3-211ENST00000491233 INSL5Q9Y5Q6 135 aa14.87□□□□□ -0.03
COL6A3-211ENST00000491233 TCHHQ07283 1943 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 TTC26A0AVF1 554 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 SEC24AO95486 1093 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 PIGRP01833 764 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 KRT18P05783 430 aaKnown RBP14.86□□□□□ -0.03
COL6A3-211ENST00000491233 ATF2P15336 505 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 CEBPBP17676 345 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 LONP1P36776 959 aaKnown RBP14.86□□□□□ -0.03
COL6A3-211ENST00000491233 ZNF131P52739 623 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 SPECC1Q5M775 1068 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 ZBTB41Q5SVQ8 909 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 TCEAL8Q8IYN2 117 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 MYCT1Q8N699 235 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 APPL2Q8NEU8 664 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 FOXQ1Q9C009 403 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 ZHX3Q9H4I2 956 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 PLEKHA5Q9HAU0 1116 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 PARVGQ9HBI0 331 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 TBX20Q9UMR3 447 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 UBQLN1Q9UMX0 589 aaKnown RBP14.86□□□□□ -0.03
COL6A3-211ENST00000491233 PCDHB8Q9UN66 801 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 COL4A2P08572 1712 aa14.86□□□□□ -0.03
COL6A3-211ENST00000491233 OGTO15294 1046 aa14.85□□□□□ -0.03
COL6A3-211ENST00000491233 TRAK2O60296 914 aa14.85□□□□□ -0.03
COL6A3-211ENST00000491233 FAM189A1O60320 539 aa14.85□□□□□ -0.03
COL6A3-211ENST00000491233 TBCAO75347 108 aaKnown RBP14.85□□□□□ -0.03
COL6A3-211ENST00000491233 DCNP07585 359 aaKnown RBP14.85□□□□□ -0.03
COL6A3-211ENST00000491233 CPB1P15086 417 aa14.85□□□□□ -0.03
COL6A3-211ENST00000491233 PTPN2P17706 415 aa14.85□□□□□ -0.03
COL6A3-211ENST00000491233 LRPAP1P30533 357 aa14.85□□□□□ -0.03
COL6A3-211ENST00000491233 GUCY2FP51841 1108 aa14.85□□□□□ -0.03
COL6A3-211ENST00000491233 ENOX2Q16206 610 aaKnown RBP14.85□□□□□ -0.03
COL6A3-211ENST00000491233 TPGS2Q68CL5 300 aa14.85□□□□□ -0.03
COL6A3-211ENST00000491233 PJA1Q8NG27 643 aa14.85□□□□□ -0.03
COL6A3-211ENST00000491233 LARP4BQ92615 738 aaKnown RBP14.85□□□□□ -0.03
COL6A3-211ENST00000491233 NKD2Q969F2 451 aaPredicted RBP14.85□□□□□ -0.03
COL6A3-211ENST00000491233 MCRS1Q96EZ8 462 aa14.85□□□□□ -0.03
COL6A3-211ENST00000491233 CORO1BQ9BR76 489 aa14.85□□□□□ -0.03
COL6A3-211ENST00000491233 AVENQ9NQS1 362 aaPredicted RBP14.85□□□□□ -0.03
COL6A3-211ENST00000491233 FANCMQ8IYD8 2048 aa14.85□□□□□ -0.03
COL6A3-211ENST00000491233 LACTBL1A8MY62 500 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 XPOTO43592 962 aaKnown RBP14.84□□□□□ -0.03
COL6A3-211ENST00000491233 SCP2P22307 547 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 MARCKSP29966 332 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-211ENST00000491233 STARD6P59095 220 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 YWHAHQ04917 246 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-211ENST00000491233 ADCY1Q08828 1119 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 SNW1Q13573 536 aaKnown RBP14.84□□□□□ -0.03
COL6A3-211ENST00000491233 CUL4AQ13619 759 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 MLF2Q15773 248 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-211ENST00000491233 ZBTB6Q15916 424 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 KYAT1Q16773 422 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 PRSS36Q5K4E3 855 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 SLC39A4Q6P5W5 647 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 POTEHQ6S545 545 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 FIZ1Q96SL8 496 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 MSTO1Q9BUK6 570 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 RPF1Q9H9Y2 349 aaKnown RBP14.84□□□□□ -0.03
COL6A3-211ENST00000491233 GDE1Q9NZC3 331 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 DLGAP2Q9P1A6 1054 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 AFF4Q9UHB7 1163 aaKnown RBP14.84□□□□□ -0.03
COL6A3-211ENST00000491233 SIT1Q9Y3P8 196 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 TIMM13Q9Y5L4 95 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-211ENST00000491233 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-211ENST00000491233 TICRRQ7Z2Z1 1910 aa14.84□□□□□ -0.03
COL6A3-211ENST00000491233 SCN1AP35498 2009 aa14.83□□□□□ -0.03
COL6A3-211ENST00000491233 A0A0B4J269 797 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 M0QZQ0 153 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 LRRN2O75325 713 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 ECI2O75521 394 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 CYP3A5P20815 502 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 NMT1P30419 496 aaKnown RBP14.83□□□□□ -0.04
COL6A3-211ENST00000491233 AARSP49588 968 aaKnown RBP eCLIP14.83□□□□□ -0.04
COL6A3-211ENST00000491233 PFKPQ01813 784 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 TWF1Q12792 350 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 RNF19BQ6ZMZ0 732 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 USP49Q70CQ1 688 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 PDZD4Q76G19 769 aaPredicted RBP14.83□□□□□ -0.04
COL6A3-211ENST00000491233 MAP4K3Q8IVH8 894 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 TCEAL4Q96EI5 215 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 FAM212AQ96EL1 285 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 SHDQ96IW2 340 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 CCSER1Q9C0I3 900 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 CLIC4Q9Y696 253 aa14.83□□□□□ -0.04
COL6A3-211ENST00000491233 KANSL1LA0AUZ9 987 aa14.82□□□□□ -0.04
COL6A3-211ENST00000491233 NRG2O14511 850 aaPredicted RBP14.82□□□□□ -0.04
COL6A3-211ENST00000491233 PPEF2O14830 753 aa14.82□□□□□ -0.04
COL6A3-211ENST00000491233 NFICP08651 508 aa14.82□□□□□ -0.04
COL6A3-211ENST00000491233 OR4Q2P0C623 313 aa14.82□□□□□ -0.04
COL6A3-211ENST00000491233 GLULP15104 373 aa14.82□□□□□ -0.04
COL6A3-211ENST00000491233 PDCP20941 246 aa14.82□□□□□ -0.04
COL6A3-211ENST00000491233 CCR2P41597 374 aa14.82□□□□□ -0.04
COL6A3-211ENST00000491233 GTF2BQ00403 316 aa14.82□□□□□ -0.04
COL6A3-211ENST00000491233 PRKCQQ04759 706 aa14.82□□□□□ -0.04
COL6A3-211ENST00000491233 PTPAQ15257 358 aa14.82□□□□□ -0.04
COL6A3-211ENST00000491233 ZC2HC1CQ53FD0 456 aaPredicted RBP14.82□□□□□ -0.04
COL6A3-211ENST00000491233 SPATA1Q5VX52 437 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms