RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 KRT4P19013 534 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 PHBP35232 272 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 EPHB1P54762 984 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 JAM2P57087 298 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 CDC16Q13042 620 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 ZNF772Q68DY9 489 aaPredicted RBP6.59□□□□□ -1.35
VPS13D-209ENST00000487188 RINLQ6ZS11 566 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 RIPOR1Q6ZS17 1223 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 ACAD11Q709F0 780 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 SATL1Q86VE3 508 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 ICA1LQ8NDH6 482 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 OR6Y1Q8NGX8 325 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 CRAMP1Q96RY5 1269 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 EYA3Q99504 573 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 KLF6Q99612 283 aaPredicted RBP6.59□□□□□ -1.35
VPS13D-209ENST00000487188 MANSC1Q9H8J5 431 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 PRDM11Q9NQV5 511 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 CHST7Q9NS84 486 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 TMOD2Q9NZR1 351 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 BTBD7Q9P203 1132 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 IFNB1P01574 187 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 CETPP11597 493 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 HARSP12081 509 aaKnown RBP6.59□□□□□ -1.35
VPS13D-209ENST00000487188 ATP6V1B1P15313 513 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 ADRA1DP25100 572 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 STAT3P40763 770 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 CASP5P51878 434 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 HPCAP84074 193 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 CDK16Q00536 496 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 CYP4A11Q02928 519 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 DCTN2Q13561 401 aaKnown RBP6.59□□□□□ -1.35
VPS13D-209ENST00000487188 PTK6Q13882 451 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 RASA2Q15283 850 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 SLC1A5Q15758 541 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 KBTBD2Q8IY47 623 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 GFM2Q969S9 779 aaKnown RBP6.59□□□□□ -1.35
VPS13D-209ENST00000487188 MAML3Q96JK9 1138 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 KRT82Q9NSB4 513 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 ZNF148Q9UQR1 794 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 BCS1LQ9Y276 419 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 USTQ9Y2C2 406 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 MT-ND3P03897 115 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 ZNF76P36508 570 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 SERPINB8P50452 374 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 MPP3Q13368 585 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 ECM1Q16610 540 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 RBM44Q6ZP01 1051 aaKnown RBP6.59□□□□□ -1.35
VPS13D-209ENST00000487188 PALB2Q86YC2 1186 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 MAPKAPK5Q8IW41 473 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 ZBED8Q8IZ13 594 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 C7orf43Q8WVR3 580 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 CCDC124Q96CT7 223 aaKnown RBP6.59□□□□□ -1.35
VPS13D-209ENST00000487188 REEP2Q9BRK0 252 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 EBF3Q9H4W6 596 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 KIAA1586Q9HCI6 787 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 SIX2Q9NPC8 291 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 AAASQ9NRG9 546 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 PTTG2Q9NZH5 202 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 ANAPC7Q9UJX3 599 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 SH3GLB1Q9Y371 365 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 THSD7AQ9UPZ6 1657 aa6.59□□□□□ -1.35
VPS13D-209ENST00000487188 GTPBP10A4D1E9 387 aaKnown RBP6.59□□□□□ -1.36
VPS13D-209ENST00000487188 ADCY3O60266 1144 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 FKBP6O75344 327 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 TRPA1O75762 1119 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 CLPTM1O96005 669 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 FGRP09769 529 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 MYL2P10916 166 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 EVA1CP58658 441 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 PDE1CQ14123 709 aaPredicted RBP6.59□□□□□ -1.36
VPS13D-209ENST00000487188 SEPT6Q14141 434 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 HIC1Q14526 733 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 PABPC1LQ4VXU2 614 aaKnown RBP6.59□□□□□ -1.36
VPS13D-209ENST00000487188 RABGAP1LQ5R372 815 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 MAP3K21Q5TCX8 1036 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 ISLR2Q6UXK2 745 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 CENPUQ71F23 418 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 OGFOD1Q8N543 542 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 JDP2Q8WYK2 163 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 TCHPQ9BT92 498 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 MKNK1Q9BUB5 465 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 LRRC19Q9H756 370 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 TLE6Q9H808 572 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 IL17RBQ9NRM6 502 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 TFCP2L1Q9NZI6 479 aa6.59□□□□□ -1.36
VPS13D-209ENST00000487188 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.59□□□□□ -1.36
VPS13D-209ENST00000487188 SIGLEC16A6NMB1 481 aa6.58□□□□□ -1.36
VPS13D-209ENST00000487188 SFI1A8K8P3 1242 aa6.58□□□□□ -1.36
VPS13D-209ENST00000487188 hCG_1984214I3L0E3 225 aa6.58□□□□□ -1.36
VPS13D-209ENST00000487188 FOXN3O00409 490 aaPredicted RBP6.58□□□□□ -1.36
VPS13D-209ENST00000487188 MAGEB2O15479 319 aa6.58□□□□□ -1.36
VPS13D-209ENST00000487188 PRPF4O43172 522 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS13D-209ENST00000487188 TCEA3O75764 348 aa6.58□□□□□ -1.36
VPS13D-209ENST00000487188 OATP04181 439 aa6.58□□□□□ -1.36
VPS13D-209ENST00000487188 RRM1P23921 792 aa6.58□□□□□ -1.36
VPS13D-209ENST00000487188 SBK1Q52WX2 424 aa6.58□□□□□ -1.36
VPS13D-209ENST00000487188 SPDYAQ5MJ70 313 aa6.58□□□□□ -1.36
VPS13D-209ENST00000487188 C1QTNF12Q5T7M4 302 aa6.58□□□□□ -1.36
VPS13D-209ENST00000487188 PCNX4Q63HM2 1172 aa6.58□□□□□ -1.36
VPS13D-209ENST00000487188 KAZNQ674X7 775 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms