RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-208	ENST00000485792	NCBP1	Q09161	790 aa	Known RBP	6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	GRIK3	Q13003	919 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	COASY	Q13057	564 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	STK38	Q15208	465 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	ZRSR1	Q15695	479 aa	Known RBP	6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	CCDC142	Q17RM4	750 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	SLC10A6	Q3KNW5	377 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	LEXM	Q3ZCV2	418 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	KIAA0319	Q5VV43	1072 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	RRAGB	Q5VZM2	374 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	MPZL3	Q6UWV2	235 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	SV2B	Q7L1I2	683 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	EFCAB13	Q8IY85	973 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	PDILT	Q8N807	584 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	KIAA0895	Q8NCT3	520 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	SNIP1	Q8TAD8	396 aa	Known RBP	6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	DEPTOR	Q8TB45	409 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	ADAMTS19	Q8TE59	1207 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	HASPIN	Q8TF76	798 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	C18orf25	Q96B23	403 aa	Predicted RBP	6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	HVCN1	Q96D96	273 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	CDK5RAP3	Q96JB5	506 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	SNX27	Q96L92	541 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	CCDC43	Q96MW1	224 aa	Known RBP	6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	ZNF558	Q96NG5	402 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	TSPAN18	Q96SJ8	248 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	APOL6	Q9BWW8	343 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	MRPL4	Q9BYD3	311 aa	Known RBP	6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	RHOBTB2	Q9BYZ6	727 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	PANK2	Q9BZ23	570 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	GPR62	Q9BZJ7	368 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	TRIM9	Q9C026	710 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	UBE2Z	Q9H832	354 aa	Predicted RBP	6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	MAGEF1	Q9HAY2	307 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	RXFP1	Q9HBX9	757 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	NGRN	Q9NPE2	291 aa	Known RBP	6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	C11orf16	Q9NQ32	467 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	TLR9	Q9NR96	1032 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	SNTG2	Q9NY99	539 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	CNTN3	Q9P232	1028 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	THEG	Q9P2T0	379 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	CCDC39	Q9UFE4	941 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	TUBGCP4	Q9UGJ1	667 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	BARX2	Q9UMQ3	279 aa	Predicted RBP	6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	INPP5F	Q9Y2H2	1132 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	MAP4K5	Q9Y4K4	846 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	NME7	Q9Y5B8	376 aa		6.26	□□□□□ -1.41
CUX1-208	ENST00000485792	NCAN	O14594	1321 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	SMIM28	A0A1B0GU29	152 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	FSD2	A1L4K1	749 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	CCDC169	A6NNP5	214 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792		H3BQ06	376 aa	Predicted RBP	6.25	□□□□□ -1.41
CUX1-208	ENST00000485792		I3L4J1	428 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	PER2	O15055	1255 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	TBC1D4	O60343	1298 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	SLFN14	P0C7P3	912 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	CXCL8	P10145	99 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	PFKFB1	P16118	471 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	GAP43	P17677	238 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	LIG1	P18858	919 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	AARS	P49588	968 aa	Known RBP eCLIP	6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	MRPS5	P82675	430 aa	Known RBP	6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	DSG1	Q02413	1049 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	SPAG1	Q07617	926 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	TUSC3	Q13454	348 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	CUL4B	Q13620	913 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	DHX8	Q14562	1220 aa	Known RBP	6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	PTPN14	Q15678	1187 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	DUSP6	Q16828	381 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	UPP1	Q16831	310 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	RTP2	Q5QGT7	225 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	LILRA6	Q6PI73	481 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	SYCE2	Q6PIF2	218 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	DYM	Q7RTS9	669 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	ABI1	Q8IZP0	508 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	IQUB	Q8NA54	791 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	ENGASE	Q8NFI3	743 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	ZNF507	Q8TCN5	953 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	SLC22A17	Q8WUG5	538 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	SUSD6	Q92537	303 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	ERCC4	Q92889	916 aa	Predicted RBP	6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	GLMN	Q92990	594 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	CDK15	Q96Q40	435 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	CDCA3	Q99618	268 aa	Predicted RBP	6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	SCAND2P	Q9GZW5	306 aa	Predicted RBP	6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	S1PR5	Q9H228	398 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	BLZF1	Q9H2G9	400 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	ALG2	Q9H553	416 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	PLEKHA5	Q9HAU0	1116 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	CPSF3	Q9UKF6	684 aa	Known RBP	6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	CDV3	Q9UKY7	258 aa	Known RBP	6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	ZDBF2	Q9HCK1	2354 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	VPS13A	Q96RL7	3174 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	MIA3	Q5JRA6	1907 aa		6.25	□□□□□ -1.41
CUX1-208	ENST00000485792	MYOF	Q9NZM1	2061 aa		6.24	□□□□□ -1.41
CUX1-208	ENST00000485792	MYO16	Q9Y6X6	1858 aa		6.24	□□□□□ -1.41
CUX1-208	ENST00000485792		A0A1B0GVL5	298 aa		6.24	□□□□□ -1.41
CUX1-208	ENST00000485792	PVALEF	A0A1B0GWK0	134 aa		6.24	□□□□□ -1.41
CUX1-208	ENST00000485792	CASTOR2	A6NHX0	329 aa		6.24	□□□□□ -1.41
CUX1-208	ENST00000485792	LCE2B	O14633	110 aa		6.24	□□□□□ -1.41

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms