RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 C1orf228Q6PIY5 440 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 LRP10Q7Z4F1 713 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 STK32AQ8WU08 396 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 DEPDC1BQ8WUY9 529 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 SCG3Q8WXD2 468 aaKnown RBP14.26□□□□□ -0.13
USP42-206ENST00000479544 FAM84AQ96KN4 292 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 MAGEB18Q96M61 343 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 TTC25Q96NG3 672 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 RANBP17Q9H2T7 1088 aaKnown RBP14.26□□□□□ -0.13
USP42-206ENST00000479544 MANSC1Q9H8J5 431 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 GPC4O75487 556 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 RPA1P27694 616 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 SOX11P35716 441 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 PTDSS1P48651 473 aaKnown RBP14.26□□□□□ -0.13
USP42-206ENST00000479544 ART3Q13508 389 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 HIC1Q14526 733 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 RSPH3Q86UC2 560 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 PRELID2Q8N945 189 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 ICA1LQ8NDH6 482 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 ARHGEF1Q92888 912 aaKnown RBP14.26□□□□□ -0.13
USP42-206ENST00000479544 RNPEPL1Q9HAU8 725 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 SLC9A2Q9UBY0 812 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 SMG5Q9UPR3 1016 aaKnown RBP14.26□□□□□ -0.13
USP42-206ENST00000479544 DISP2A7MBM2 1401 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 PDE4DIPQ5VU43 2346 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 BBOX1O75936 387 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 ZSCAN5DPP0CG00 497 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 MYL2P10916 166 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 NPEPPSP55786 919 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 KPNB1Q14974 876 aaKnown RBP14.26□□□□□ -0.13
USP42-206ENST00000479544 ZCWPW2Q504Y3 356 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 FBXO33Q7Z6M2 555 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 PRPF39Q86UA1 669 aaKnown RBP14.26□□□□□ -0.13
USP42-206ENST00000479544 C7orf31Q8N865 590 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 C4orf32Q8N8J7 132 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 TNFRSF25Q93038 417 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 GPRC5CQ9NQ84 441 aa14.26□□□□□ -0.13
USP42-206ENST00000479544 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.25□□□□□ -0.13
USP42-206ENST00000479544 NEMP1O14524 444 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 GJB6O95452 261 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 EEF1B2P24534 225 aaKnown RBP14.25□□□□□ -0.13
USP42-206ENST00000479544 HNRNPH3P31942 346 aaKnown RBP14.25□□□□□ -0.13
USP42-206ENST00000479544 SPRED3Q2MJR0 410 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 CBWD6Q4V339 395 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 CBWD3Q5JTY5 395 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 CBWD5Q5RIA9 395 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 OR6B2Q6IFH4 312 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 THNSL1Q8IYQ7 743 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 FITM2Q8N6M3 262 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 MRPL46Q9H2W6 279 aaKnown RBP14.25□□□□□ -0.13
USP42-206ENST00000479544 XAB2Q9HCS7 855 aaKnown RBP14.25□□□□□ -0.13
USP42-206ENST00000479544 PSMC3IPQ9P2W1 217 aaPredicted RBP14.25□□□□□ -0.13
USP42-206ENST00000479544 AGAP1Q9UPQ3 857 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.25□□□□□ -0.13
USP42-206ENST00000479544 ADCY3O60266 1144 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 APRTP07741 180 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 YARSP54577 528 aaKnown RBP14.25□□□□□ -0.13
USP42-206ENST00000479544 AP3B2Q13367 1082 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 KCNT1Q5JUK3 1230 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 RNF220Q5VTB9 566 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 CCDC33Q8N5R6 958 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 DNAAF3Q8N9W5 541 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 PDZD8Q8NEN9 1154 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 FAM149B1Q96BN6 582 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 RBM41Q96IZ5 413 aaKnown RBP14.25□□□□□ -0.13
USP42-206ENST00000479544 PCMTD2Q9NV79 361 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 DDX18Q9NVP1 670 aaKnown RBP14.25□□□□□ -0.13
USP42-206ENST00000479544 CCDC78A2IDD5 438 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 DGKIO75912 1065 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 SEC24DO94855 1032 aaPredicted RBP14.25□□□□□ -0.13
USP42-206ENST00000479544 CHKAP35790 457 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 ECM1Q16610 540 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 IYDQ6PHW0 289 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 EEPD1Q7L9B9 569 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 IRF2BP2Q7Z5L9 587 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 CBWD2Q8IUF1 395 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 TRIM42Q8IWZ5 723 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 RMDN2Q96LZ7 410 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 USP20Q9Y2K6 914 aa14.25□□□□□ -0.13
USP42-206ENST00000479544 COL5A2P05997 1499 aaPredicted RBP14.25□□□□□ -0.13
USP42-206ENST00000479544 TCRBV7S2A1N4TA0A589 114 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 SSTR1P30872 391 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 PRAMEP78395 509 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 PCNX4Q63HM2 1172 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 BTNL9Q6UXG8 535 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 CDKL2Q92772 493 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 PURBQ96QR8 312 aaKnown RBP14.24□□□□□ -0.13
USP42-206ENST00000479544 TOPORSQ9NS56 1045 aaPredicted RBP14.24□□□□□ -0.13
USP42-206ENST00000479544 KRT36O76013 467 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 HSPA4LO95757 839 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 ADRA1DP25100 572 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 TNFRSF8P28908 595 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 ECE1P42892 770 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 GSCP56915 257 aaPredicted RBP14.24□□□□□ -0.13
USP42-206ENST00000479544 PHEXP78562 749 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 MTMR2Q13614 643 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 RPS6KA2Q15349 733 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 CNGA3Q16281 694 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 KLHL38Q2WGJ6 581 aa14.24□□□□□ -0.13
USP42-206ENST00000479544 DAGLBQ8NCG7 672 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms