RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ECI2O75521 394 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 OAZ2O95190 189 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 VNN2O95498 520 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 DCNP07585 359 aaKnown RBP13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CLTAP09496 248 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CYP3A5P20815 502 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SCP2P22307 547 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 EPHA5P54756 1037 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 PRKCQQ04759 706 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 STRN3Q13033 797 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 FZD5Q13467 585 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SLC44A4Q53GD3 710 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 HAUS6Q7Z4H7 955 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 C1orf210Q8IVY1 113 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 DDX12PQ92771 950 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SHDQ96IW2 340 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 TBC1D32Q96NH3 1257 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 OSBPL6Q9BZF3 934 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 FOXQ1Q9C009 403 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SEMA4AQ9H3S1 761 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 LARSQ9P2J5 1176 aaKnown RBP13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 TUBGCP4Q9UGJ1 667 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 MRPS23Q9Y3D9 190 aaKnown RBP13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SCN1AP35498 2009 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 KANSL1LA0AUZ9 987 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 H0YCG3 227 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 STK25O00506 426 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 MOSPD3O75425 235 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CXCL8P10145 99 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 FCARP24071 287 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CCR2P41597 374 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 MCM2P49736 904 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 GRIN1Q05586 938 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SNW1Q13573 536 aaKnown RBP13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ZRSR1Q15695 479 aaKnown RBP13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 MLF2Q15773 248 aaPredicted RBP13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 TANGO2Q6ICL3 276 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SLC39A4Q6P5W5 647 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ZNF687Q8N1G0 1237 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 APPL2Q8NEU8 664 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ELSPBP1Q96BH3 223 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 TCEAL4Q96EI5 215 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 TSPAN18Q96SJ8 248 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 KXD1Q9BQD3 176 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 REEP2Q9BRK0 252 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CEP72Q9P209 647 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ANKFY1Q9P2R3 1169 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 AFF4Q9UHB7 1163 aaKnown RBP13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 TBX20Q9UMR3 447 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 PCDHB8Q9UN66 801 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 INSL5Q9Y5Q6 135 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 DNAH14Q0VDD8 3507 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 COL4A2P08572 1712 aa13.36□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CACNA1AO00555 2505 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 A0A0B4J269 797 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 LACTBL1A8MY62 500 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 H3BQV1 296 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 LRRN2O75325 713 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 HARSP12081 509 aaKnown RBP13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CEBPBP17676 345 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 TNFSF9P41273 254 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 GTF2BQ00403 316 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 PFKPQ01813 784 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ENOX2Q16206 610 aaKnown RBP13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 KYAT1Q16773 422 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CTXN3Q4LDR2 81 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ZBTB41Q5SVQ8 909 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 LARP1BQ659C4 914 aaKnown RBP13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ING5Q8WYH8 240 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CLDN23Q96B33 292 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 MCRS1Q96EZ8 462 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 LRRC3Q9BY71 257 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CYP4F11Q9HBI6 524 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 MTF2Q9Y483 593 aaPredicted RBP13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 NUB1Q9Y5A7 615 aa13.35□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CEP250Q9BV73 2442 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 PRRG1O14668 218 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 OGTO15294 1046 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 LRG1P02750 347 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SP9P0CG40 484 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ELF1P32519 619 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 MCM4P33991 863 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 LONP1P36776 959 aaKnown RBP13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SPAG1Q07617 926 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ADCY1Q08828 1119 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CUL4AQ13619 759 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SPATA1Q5VX52 437 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ZNF280DQ6N043 979 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 RNF19BQ6ZMZ0 732 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 BRAPQ7Z569 592 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 GPBP1Q86WP2 473 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ADSSL1Q8N142 457 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 RAD54LQ92698 747 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CDK5RAP3Q96JB5 506 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ASB16Q96NS5 453 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 OXCT2Q9BYC2 517 aaPredicted RBP13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CCSER1Q9C0I3 900 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ST6GALNAC4Q9H4F1 302 aa13.34□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 TRPV4Q9HBA0 871 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms