RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 TMEM139Q8IV31 216 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 HERC6Q8IVU3 1022 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 KBTBD7Q8WVZ9 684 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 CLP1Q92989 425 aaKnown RBP10.67□□□□□ -0.7
SF3A1-207ENST00000471342 PGBD4Q96DM1 585 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 PPP1R9BQ96SB3 815 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 BCO2Q9BYV7 579 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 DPP3Q9NY33 737 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 FBXL5Q9UKA1 691 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 UBQLN1Q9UMX0 589 aaKnown RBP10.67□□□□□ -0.7
SF3A1-207ENST00000471342 POLIQ9UNA4 740 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 PCDHB7Q9Y5E2 793 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 FHOD1Q9Y613 1164 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 MRPL42Q9Y6G3 142 aaKnown RBP10.67□□□□□ -0.7
SF3A1-207ENST00000471342 PDCD11Q14690 1871 aaKnown RBP10.66□□□□□ -0.7
SF3A1-207ENST00000471342 TMEM189-UBE2V1I3L0A0 370 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 GABRDO14764 452 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 HCRTO43612 131 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 THP07101 528 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 PNMA6AP0CW24 399 aaPredicted RBP10.66□□□□□ -0.7
SF3A1-207ENST00000471342 KRT13P13646 458 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 TNNI1P19237 187 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 KCNA4P22459 653 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 POLR2BP30876 1174 aaKnown RBP10.66□□□□□ -0.7
SF3A1-207ENST00000471342 PBX3P40426 434 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 ZNF132P52740 706 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 AP3M2P53677 418 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 LILRA4P59901 499 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 UBXN1Q04323 297 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 GRIK3Q13003 919 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 TUSC3Q13454 348 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 CAMK1Q14012 370 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 MRPL58Q14197 206 aaKnown RBP10.66□□□□□ -0.7
SF3A1-207ENST00000471342 TPD52L1Q16890 204 aaPredicted RBP10.66□□□□□ -0.7
SF3A1-207ENST00000471342 SOWAHAQ2M3V2 549 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 TIGD5Q53EQ6 642 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 OSTM1Q86WC4 334 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 TC2NQ8N9U0 490 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 RNF169Q8NCN4 708 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 FBXL13Q8NEE6 735 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 PHOSPHO2Q8TCD6 241 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 FAM212AQ96EL1 285 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 TWNKQ96RR1 684 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 PKMYT1Q99640 499 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 TRIM6Q9C030 488 aaPredicted RBP10.66□□□□□ -0.7
SF3A1-207ENST00000471342 UBN1Q9NPG3 1134 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 GDAP2Q9NXN4 497 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 HMGXB4Q9UGU5 601 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 ITGA11Q9UKX5 1188 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 NENFQ9UMX5 172 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 YBX2Q9Y2T7 364 aaKnown RBP10.66□□□□□ -0.7
SF3A1-207ENST00000471342 TRIP11Q15643 1979 aa10.66□□□□□ -0.7
SF3A1-207ENST00000471342 CASTOR2A6NHX0 329 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 M0QZQ0 153 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 PODXLO00592 558 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 NRP1O14786 923 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 KIF4AO95239 1232 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 SERPINC1P01008 464 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 CALCAP01258 141 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 UCHL3P15374 230 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 CDK11BP21127 795 aaKnown RBP10.65□□□□□ -0.7
SF3A1-207ENST00000471342 HNRNPH3P31942 346 aaKnown RBP10.65□□□□□ -0.7
SF3A1-207ENST00000471342 RABGGTBP53611 331 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 YARSP54577 528 aaKnown RBP10.65□□□□□ -0.7
SF3A1-207ENST00000471342 MYL7Q01449 175 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 EXOC3L4Q17RC7 722 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 CCDC142Q17RM4 750 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 TMEM132AQ24JP5 1023 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 TCERG1LQ5VWI1 586 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 HGSNATQ68CP4 663 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 PSRC1Q6PGN9 363 aaPredicted RBP10.65□□□□□ -0.7
SF3A1-207ENST00000471342 IRF2BP2Q7Z5L9 587 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 CMTR2Q8IYT2 770 aaKnown RBP10.65□□□□□ -0.7
SF3A1-207ENST00000471342 LRRC52Q8N7C0 313 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 SHC3Q92529 594 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 FNBP1Q96RU3 617 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 GPR62Q9BZJ7 368 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 MMRN2Q9H8L6 949 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 ACP6Q9NPH0 428 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.65□□□□□ -0.72e-6■■■■■ 149.1
SF3A1-207ENST00000471342 GCNT4Q9P109 453 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 MAGEC2Q9UBF1 373 aaPredicted RBP10.65□□□□□ -0.7
SF3A1-207ENST00000471342 CAPN11Q9UMQ6 739 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 L1RE1Q9UN81 338 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 AGAP1Q9UPQ3 857 aa10.65□□□□□ -0.7
SF3A1-207ENST00000471342 FNDC1Q4ZHG4 1894 aaPredicted RBP10.65□□□□□ -0.7
SF3A1-207ENST00000471342 SCN1AP35498 2009 aa10.65□□□□□ -0.71
SF3A1-207ENST00000471342 TBKBP1A7MCY6 615 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 FOXN3O00409 490 aaPredicted RBP10.64□□□□□ -0.71
SF3A1-207ENST00000471342 LILRB3O75022 631 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 EFCAB14O75071 495 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 ZC3H11AO75152 810 aaKnown RBP eCLIP10.64□□□□□ -0.71
SF3A1-207ENST00000471342 UPP2O95045 317 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 VNN2O95498 520 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 AMHP03971 560 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 DNAJB1P25685 340 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 RPL9P32969 192 aaKnown RBP10.64□□□□□ -0.71
SF3A1-207ENST00000471342 CLCN1P35523 988 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 PBX2P40425 430 aa10.64□□□□□ -0.71
SF3A1-207ENST00000471342 BRCC3P46736 316 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms